Hb_009421_030

Information

Type -
Description -
Location Contig9421: 32929-43466
Sequence    

Annotation

kegg
ID rcu:RCOM_1407450
description hypothetical protein
nr
ID XP_012079223.1
description PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
swissprot
ID Q8IDX6
description Reticulocyte-binding protein 2 homolog a OS=Plasmodium falciparum (isolate 3D7) GN=PF13_0198 PE=3 SV=1
trembl
ID A0A067KJB3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12385 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63201: 33292-33828 , PASA_asmbl_63202: 35165-39807 , PASA_asmbl_63203: 35310-36005 , PASA_asmbl_63204: 40922-43386
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009421_030 0.0 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
2 Hb_001486_120 0.0792576177 - - PREDICTED: importin-5-like [Jatropha curcas]
3 Hb_000291_120 0.0877156582 transcription factor TF Family: ARF PREDICTED: auxin response factor 17 [Jatropha curcas]
4 Hb_001582_030 0.0901643013 - - PREDICTED: uncharacterized protein LOC105639462 [Jatropha curcas]
5 Hb_000367_290 0.0946377226 - - PREDICTED: uncharacterized protein LOC105640583 [Jatropha curcas]
6 Hb_005295_040 0.0955611494 - - PREDICTED: polyadenylate-binding protein RBP47-like [Jatropha curcas]
7 Hb_000152_890 0.0956976684 - - hypothetical protein JCGZ_26265 [Jatropha curcas]
8 Hb_013753_010 0.0957990836 - - PREDICTED: uncharacterized protein LOC105647969 isoform X1 [Jatropha curcas]
9 Hb_008528_010 0.0960738747 - - PREDICTED: uncharacterized protein LOC105628498 [Jatropha curcas]
10 Hb_000805_310 0.0972744634 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic [Jatropha curcas]
11 Hb_004531_090 0.0986701195 - - PREDICTED: VHS domain-containing protein At3g16270 [Jatropha curcas]
12 Hb_000134_360 0.0987693304 - - PREDICTED: protein gar2 [Jatropha curcas]
13 Hb_004032_350 0.0988356242 - - PREDICTED: splicing factor U2af small subunit B-like isoform X1 [Musa acuminata subsp. malaccensis]
14 Hb_007441_070 0.1009394068 - - hypothetical protein PRUPE_ppa004494mg [Prunus persica]
15 Hb_012016_020 0.1026366366 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105636265 [Jatropha curcas]
16 Hb_153547_010 0.1061951869 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
17 Hb_005000_270 0.1071245807 - - unnamed protein product [Vitis vinifera]
18 Hb_019871_020 0.1071627892 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]
19 Hb_000453_080 0.1078153443 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_000116_280 0.1080906187 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009421_030 Hb_009421_030 Hb_001486_120 Hb_001486_120 Hb_009421_030--Hb_001486_120 Hb_000291_120 Hb_000291_120 Hb_009421_030--Hb_000291_120 Hb_001582_030 Hb_001582_030 Hb_009421_030--Hb_001582_030 Hb_000367_290 Hb_000367_290 Hb_009421_030--Hb_000367_290 Hb_005295_040 Hb_005295_040 Hb_009421_030--Hb_005295_040 Hb_000152_890 Hb_000152_890 Hb_009421_030--Hb_000152_890 Hb_000136_150 Hb_000136_150 Hb_001486_120--Hb_000136_150 Hb_000134_360 Hb_000134_360 Hb_001486_120--Hb_000134_360 Hb_000805_310 Hb_000805_310 Hb_001486_120--Hb_000805_310 Hb_000317_440 Hb_000317_440 Hb_001486_120--Hb_000317_440 Hb_008528_010 Hb_008528_010 Hb_001486_120--Hb_008528_010 Hb_004531_090 Hb_004531_090 Hb_000291_120--Hb_004531_090 Hb_000035_400 Hb_000035_400 Hb_000291_120--Hb_000035_400 Hb_004032_350 Hb_004032_350 Hb_000291_120--Hb_004032_350 Hb_073171_080 Hb_073171_080 Hb_000291_120--Hb_073171_080 Hb_004724_360 Hb_004724_360 Hb_000291_120--Hb_004724_360 Hb_000327_310 Hb_000327_310 Hb_000291_120--Hb_000327_310 Hb_005000_270 Hb_005000_270 Hb_001582_030--Hb_005000_270 Hb_000212_280 Hb_000212_280 Hb_001582_030--Hb_000212_280 Hb_001582_030--Hb_000134_360 Hb_019871_020 Hb_019871_020 Hb_001582_030--Hb_019871_020 Hb_001582_030--Hb_008528_010 Hb_000732_020 Hb_000732_020 Hb_001582_030--Hb_000732_020 Hb_000367_290--Hb_000152_890 Hb_000116_280 Hb_000116_280 Hb_000367_290--Hb_000116_280 Hb_000367_290--Hb_005295_040 Hb_000367_290--Hb_004032_350 Hb_001975_020 Hb_001975_020 Hb_000367_290--Hb_001975_020 Hb_000413_130 Hb_000413_130 Hb_000367_290--Hb_000413_130 Hb_005295_040--Hb_004724_360 Hb_002725_070 Hb_002725_070 Hb_005295_040--Hb_002725_070 Hb_005295_040--Hb_001975_020 Hb_005635_010 Hb_005635_010 Hb_005295_040--Hb_005635_010 Hb_005295_040--Hb_000327_310 Hb_000152_890--Hb_004032_350 Hb_000152_890--Hb_004724_360 Hb_000001_180 Hb_000001_180 Hb_000152_890--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_000152_890--Hb_005314_010 Hb_002133_030 Hb_002133_030 Hb_000152_890--Hb_002133_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
72.8343 35.9468 5.41832 9.94697 110.964 108.381
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.5129 17.0612 29.3723 20.3097 17.8466

CAGE analysis