Hb_009421_040

Information

Type -
Description -
Location Contig9421: 49721-58549
Sequence    

Annotation

kegg
ID rcu:RCOM_1407440
description hypothetical protein
nr
ID XP_012079222.1
description PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
swissprot
ID O02494
description Eukaryotic initiation factor 4A OS=Cryptosporidium parvum GN=EIF4-A PE=2 SV=1
trembl
ID A0A067KA95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12384 PE=4 SV=1
Gene Ontology
ID GO:0004386
description eukaryotic initiation factor 4a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63205: 49805-58415 , PASA_asmbl_63206: 50531-50991 , PASA_asmbl_63208: 49805-57757
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009421_040 0.0 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
2 Hb_005357_130 0.07378203 - - hypothetical protein L484_012905 [Morus notabilis]
3 Hb_002687_170 0.0774701124 - - PREDICTED: G patch domain and ankyrin repeat-containing protein 1 homolog [Jatropha curcas]
4 Hb_000086_550 0.0798549528 - - Os02g0814700 [Oryza sativa Japonica Group]
5 Hb_001117_090 0.082610365 - - PREDICTED: NADPH-dependent pterin aldehyde reductase [Jatropha curcas]
6 Hb_003623_050 0.0839741375 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005211_190 0.084921289 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
8 Hb_005181_030 0.0869648742 - - PREDICTED: huntingtin-interacting protein K [Jatropha curcas]
9 Hb_002107_120 0.0891609069 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
10 Hb_006541_010 0.0893666273 - - PREDICTED: uncharacterized protein LOC105637261 isoform X1 [Jatropha curcas]
11 Hb_004871_040 0.0906296107 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
12 Hb_003053_030 0.0909507714 - - PREDICTED: transport and Golgi organization 2 homolog [Jatropha curcas]
13 Hb_001433_050 0.0909850776 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_000680_140 0.0922173868 - - PREDICTED: uncharacterized protein LOC105631472 isoform X1 [Jatropha curcas]
15 Hb_002431_050 0.0934515624 - - PREDICTED: probable protein phosphatase 2C 11 [Jatropha curcas]
16 Hb_004459_040 0.0935829 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
17 Hb_002609_210 0.0940357508 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
18 Hb_001279_360 0.0957911808 - - protein with unknown function [Ricinus communis]
19 Hb_002713_070 0.0961535532 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
20 Hb_029584_060 0.0961873627 - - Grave disease carrier protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009421_040 Hb_009421_040 Hb_005357_130 Hb_005357_130 Hb_009421_040--Hb_005357_130 Hb_002687_170 Hb_002687_170 Hb_009421_040--Hb_002687_170 Hb_000086_550 Hb_000086_550 Hb_009421_040--Hb_000086_550 Hb_001117_090 Hb_001117_090 Hb_009421_040--Hb_001117_090 Hb_003623_050 Hb_003623_050 Hb_009421_040--Hb_003623_050 Hb_005211_190 Hb_005211_190 Hb_009421_040--Hb_005211_190 Hb_005357_130--Hb_000086_550 Hb_005357_130--Hb_003623_050 Hb_012022_120 Hb_012022_120 Hb_005357_130--Hb_012022_120 Hb_006541_010 Hb_006541_010 Hb_005357_130--Hb_006541_010 Hb_006816_210 Hb_006816_210 Hb_005357_130--Hb_006816_210 Hb_001158_230 Hb_001158_230 Hb_002687_170--Hb_001158_230 Hb_004459_040 Hb_004459_040 Hb_002687_170--Hb_004459_040 Hb_005181_030 Hb_005181_030 Hb_002687_170--Hb_005181_030 Hb_005474_060 Hb_005474_060 Hb_002687_170--Hb_005474_060 Hb_003994_040 Hb_003994_040 Hb_002687_170--Hb_003994_040 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_000926_300 Hb_000926_300 Hb_001117_090--Hb_000926_300 Hb_003599_040 Hb_003599_040 Hb_001117_090--Hb_003599_040 Hb_000877_020 Hb_000877_020 Hb_001117_090--Hb_000877_020 Hb_001117_090--Hb_000340_140 Hb_001246_060 Hb_001246_060 Hb_001117_090--Hb_001246_060 Hb_000136_170 Hb_000136_170 Hb_003623_050--Hb_000136_170 Hb_026048_070 Hb_026048_070 Hb_003623_050--Hb_026048_070 Hb_003623_050--Hb_000086_550 Hb_011644_030 Hb_011644_030 Hb_003623_050--Hb_011644_030 Hb_001505_020 Hb_001505_020 Hb_003623_050--Hb_001505_020 Hb_000365_080 Hb_000365_080 Hb_005211_190--Hb_000365_080 Hb_002609_210 Hb_002609_210 Hb_005211_190--Hb_002609_210 Hb_001424_020 Hb_001424_020 Hb_005211_190--Hb_001424_020 Hb_002107_120 Hb_002107_120 Hb_005211_190--Hb_002107_120 Hb_000680_140 Hb_000680_140 Hb_005211_190--Hb_000680_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03424 1.49102 3.18545 3.95454 5.83253 8.19174
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.083 20.1825 8.14164 5.24405 5.32088

CAGE analysis