Hb_009421_060

Information

Type -
Description -
Location Contig9421: 72343-72915
Sequence    

Annotation

kegg
ID pop:POPTR_0007s11130g
description POPTRDRAFT_562983; hypothetical protein
nr
ID XP_012079219.1
description PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
swissprot
ID Q9ZQE6
description Calmodulin-like protein 1 OS=Arabidopsis thaliana GN=CML1 PE=2 SV=1
trembl
ID A0A067K6Q4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12382 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calmodulin-like protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63210: 72230-73315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009421_060 0.0 - - PREDICTED: calmodulin-like protein 1 [Jatropha curcas]
2 Hb_001579_160 0.0552301905 - - PREDICTED: kininogen-1-like [Jatropha curcas]
3 Hb_000083_200 0.0684000745 - - conserved hypothetical protein [Ricinus communis]
4 Hb_021596_050 0.0696170851 - - conserved hypothetical protein [Ricinus communis]
5 Hb_180088_010 0.0724926081 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_001500_020 0.0754253918 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_001541_170 0.0798272463 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
8 Hb_001722_110 0.0846124832 - - DUF26 domain-containing protein 1 precursor, putative [Ricinus communis]
9 Hb_003598_050 0.0860148929 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
10 Hb_112950_010 0.0887954194 - - hypothetical protein JCGZ_00277 [Jatropha curcas]
11 Hb_007919_010 0.0893543463 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006351_050 0.0902214727 - - PREDICTED: uncharacterized protein LOC105133646 [Populus euphratica]
13 Hb_000497_030 0.0909837787 - - -
14 Hb_071079_040 0.0915043168 - - PREDICTED: bidirectional sugar transporter SWEET3 [Jatropha curcas]
15 Hb_001454_350 0.0921592133 - - PREDICTED: uncharacterized protein LOC105643449 [Jatropha curcas]
16 Hb_013399_060 0.0922312311 - - PREDICTED: uncharacterized protein LOC105133408 [Populus euphratica]
17 Hb_001349_040 0.0927980136 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH30-like [Populus euphratica]
18 Hb_004158_040 0.0934357264 - - PREDICTED: WAT1-related protein At2g37460-like [Jatropha curcas]
19 Hb_002014_130 0.0968507955 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000172_450 0.0992131647 - - Uncharacterized protein TCM_001203 [Theobroma cacao]

Gene co-expression network

sample Hb_009421_060 Hb_009421_060 Hb_001579_160 Hb_001579_160 Hb_009421_060--Hb_001579_160 Hb_000083_200 Hb_000083_200 Hb_009421_060--Hb_000083_200 Hb_021596_050 Hb_021596_050 Hb_009421_060--Hb_021596_050 Hb_180088_010 Hb_180088_010 Hb_009421_060--Hb_180088_010 Hb_001500_020 Hb_001500_020 Hb_009421_060--Hb_001500_020 Hb_001541_170 Hb_001541_170 Hb_009421_060--Hb_001541_170 Hb_004158_040 Hb_004158_040 Hb_001579_160--Hb_004158_040 Hb_001579_160--Hb_001541_170 Hb_001454_350 Hb_001454_350 Hb_001579_160--Hb_001454_350 Hb_001722_110 Hb_001722_110 Hb_001579_160--Hb_001722_110 Hb_001579_160--Hb_180088_010 Hb_001349_040 Hb_001349_040 Hb_000083_200--Hb_001349_040 Hb_112950_010 Hb_112950_010 Hb_000083_200--Hb_112950_010 Hb_000497_030 Hb_000497_030 Hb_000083_200--Hb_000497_030 Hb_006717_060 Hb_006717_060 Hb_000083_200--Hb_006717_060 Hb_000699_220 Hb_000699_220 Hb_000083_200--Hb_000699_220 Hb_021596_050--Hb_000083_200 Hb_021596_050--Hb_001500_020 Hb_021596_050--Hb_180088_010 Hb_021596_050--Hb_112950_010 Hb_021596_050--Hb_001579_160 Hb_006351_050 Hb_006351_050 Hb_180088_010--Hb_006351_050 Hb_180088_010--Hb_001500_020 Hb_007919_010 Hb_007919_010 Hb_180088_010--Hb_007919_010 Hb_180088_010--Hb_112950_010 Hb_003598_050 Hb_003598_050 Hb_180088_010--Hb_003598_050 Hb_001500_020--Hb_006351_050 Hb_001500_020--Hb_003598_050 Hb_001500_020--Hb_112950_010 Hb_135757_030 Hb_135757_030 Hb_001500_020--Hb_135757_030 Hb_000172_450 Hb_000172_450 Hb_001500_020--Hb_000172_450 Hb_000098_230 Hb_000098_230 Hb_001541_170--Hb_000098_230 Hb_005588_050 Hb_005588_050 Hb_001541_170--Hb_005588_050 Hb_001541_170--Hb_007919_010 Hb_001541_170--Hb_004158_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.431324 61.7785 70.6072 698.509 0.315376 1.14031
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.216439 0 0 15.04 137.022

CAGE analysis