Hb_009421_100

Information

Type transcription factor
Description TF Family: B3
Location Contig9421: 92554-100634
Sequence    

Annotation

kegg
ID rcu:RCOM_1407360
description hypothetical protein
nr
ID XP_012079217.1
description PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
swissprot
ID Q0JP99
description B3 domain-containing protein Os01g0234100 OS=Oryza sativa subsp. japonica GN=Os01g0234100 PE=2 SV=1
trembl
ID A0A067K729
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12378 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing protein os01g0234100-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63214: 92570-100338 , PASA_asmbl_63218: 100341-100465 , PASA_asmbl_63219: 101114-101517
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009421_100 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
2 Hb_007786_010 0.0874774357 - - PREDICTED: uncharacterized protein LOC100801920 [Glycine max]
3 Hb_002025_140 0.0895442703 - - PREDICTED: UBX domain-containing protein 2 isoform X1 [Jatropha curcas]
4 Hb_000684_180 0.0904383675 - - PREDICTED: importin subunit alpha-9 isoform X1 [Jatropha curcas]
5 Hb_003384_030 0.0977824195 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
6 Hb_000573_040 0.0986263655 - - hypothetical protein JCGZ_19524 [Jatropha curcas]
7 Hb_000462_150 0.1011460397 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
8 Hb_002818_040 0.1011826908 - - tRNA synthetase-related family protein [Populus trichocarpa]
9 Hb_003352_050 0.1012651819 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
10 Hb_011644_020 0.1015568205 - - PREDICTED: choline-phosphate cytidylyltransferase 2 [Vitis vinifera]
11 Hb_000300_540 0.1025670447 - - PREDICTED: syntaxin-132 [Jatropha curcas]
12 Hb_000768_030 0.103344282 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
13 Hb_005914_230 0.1037664098 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
14 Hb_001969_040 0.1044997163 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_002986_050 0.1052195832 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0234100-like [Jatropha curcas]
16 Hb_000363_340 0.1054457048 - - PREDICTED: syntaxin-52-like isoform X2 [Jatropha curcas]
17 Hb_000347_080 0.1059584863 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
18 Hb_007111_040 0.1068878566 - - PREDICTED: uncharacterized protein LOC105628142 isoform X1 [Jatropha curcas]
19 Hb_002377_040 0.1069249956 - - serine/threonine protein kinase, putative [Ricinus communis]
20 Hb_003216_110 0.1071382493 - - PREDICTED: vacuolar protein-sorting-associated protein 11 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_009421_100 Hb_009421_100 Hb_007786_010 Hb_007786_010 Hb_009421_100--Hb_007786_010 Hb_002025_140 Hb_002025_140 Hb_009421_100--Hb_002025_140 Hb_000684_180 Hb_000684_180 Hb_009421_100--Hb_000684_180 Hb_003384_030 Hb_003384_030 Hb_009421_100--Hb_003384_030 Hb_000573_040 Hb_000573_040 Hb_009421_100--Hb_000573_040 Hb_000462_150 Hb_000462_150 Hb_009421_100--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_007786_010--Hb_002818_040 Hb_012977_010 Hb_012977_010 Hb_007786_010--Hb_012977_010 Hb_000300_540 Hb_000300_540 Hb_007786_010--Hb_000300_540 Hb_006029_010 Hb_006029_010 Hb_007786_010--Hb_006029_010 Hb_005725_070 Hb_005725_070 Hb_007786_010--Hb_005725_070 Hb_002025_140--Hb_000573_040 Hb_004531_090 Hb_004531_090 Hb_002025_140--Hb_004531_090 Hb_000165_130 Hb_000165_130 Hb_002025_140--Hb_000165_130 Hb_000173_370 Hb_000173_370 Hb_002025_140--Hb_000173_370 Hb_003216_110 Hb_003216_110 Hb_002025_140--Hb_003216_110 Hb_004032_350 Hb_004032_350 Hb_002025_140--Hb_004032_350 Hb_000684_180--Hb_000573_040 Hb_000631_150 Hb_000631_150 Hb_000684_180--Hb_000631_150 Hb_003352_050 Hb_003352_050 Hb_000684_180--Hb_003352_050 Hb_000134_360 Hb_000134_360 Hb_000684_180--Hb_000134_360 Hb_011644_020 Hb_011644_020 Hb_000684_180--Hb_011644_020 Hb_001195_030 Hb_001195_030 Hb_000684_180--Hb_001195_030 Hb_000001_180 Hb_000001_180 Hb_003384_030--Hb_000001_180 Hb_003384_030--Hb_000462_150 Hb_005914_230 Hb_005914_230 Hb_003384_030--Hb_005914_230 Hb_003384_030--Hb_002818_040 Hb_018663_020 Hb_018663_020 Hb_003384_030--Hb_018663_020 Hb_001969_040 Hb_001969_040 Hb_003384_030--Hb_001969_040 Hb_000573_040--Hb_000134_360 Hb_000212_280 Hb_000212_280 Hb_000573_040--Hb_000212_280 Hb_005028_010 Hb_005028_010 Hb_000573_040--Hb_005028_010 Hb_000573_040--Hb_004531_090 Hb_000462_150--Hb_001969_040 Hb_000462_150--Hb_002818_040 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000462_150--Hb_000001_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
69.3837 12.7659 17.9906 9.19626 75.1589 76.5557
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.5961 13.4899 30.288 10.323 5.04868

CAGE analysis