Hb_009434_060

Information

Type -
Description -
Location Contig9434: 42405-46708
Sequence    

Annotation

kegg
ID bdi:100827823
description uncharacterized LOC100827823
nr
ID CCH50976.1
description T4.15 [Malus x robusta]
swissprot
ID O02751
description Craniofacial development protein 2 OS=Bos taurus GN=CFDP2 PE=1 SV=2
trembl
ID I7K8L3
description T4.15 protein OS=Malus x robusta GN=T4.15 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009434_060 0.0 - - T4.15 [Malus x robusta]
2 Hb_001366_260 0.1103628984 - - T4.15 [Malus x robusta]
3 Hb_000820_100 0.1116939603 - - RNA-directed DNA polymerase [Arachis hypogaea]
4 Hb_007543_020 0.1130158329 - - PREDICTED: uncharacterized protein LOC104229533, partial [Nicotiana sylvestris]
5 Hb_011472_050 0.1173293161 - - -
6 Hb_116784_020 0.1202414049 - - PREDICTED: uncharacterized protein LOC104898613 [Beta vulgaris subsp. vulgaris]
7 Hb_000173_110 0.1275597302 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
8 Hb_142522_040 0.1336296878 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
9 Hb_001405_230 0.1341135925 - - STELAR K+ outward rectifier isoform 2 [Theobroma cacao]
10 Hb_005092_090 0.1343480697 - - cold regulated protein [Manihot esculenta]
11 Hb_000732_180 0.1371976447 - - Uncharacterized protein TCM_030007 [Theobroma cacao]
12 Hb_005542_010 0.1399338767 - - Uncharacterized protein TCM_021447 [Theobroma cacao]
13 Hb_010565_030 0.1411963729 - - hypothetical protein VITISV_006810 [Vitis vinifera]
14 Hb_067472_010 0.1460503973 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
15 Hb_000527_120 0.1495977901 - - hypothetical protein VITISV_027174 [Vitis vinifera]
16 Hb_001514_150 0.1538482687 - - PREDICTED: cytochrome P450 81E8-like [Jatropha curcas]
17 Hb_003913_040 0.1539557104 - - ferric reductase oxidase [Manihot esculenta]
18 Hb_001468_040 0.1566563056 - - Uncharacterized protein TCM_024268 [Theobroma cacao]
19 Hb_000060_130 0.1567359996 - - -
20 Hb_002013_030 0.1601988222 - - PREDICTED: uncharacterized protein LOC104799692 [Tarenaya hassleriana]

Gene co-expression network

sample Hb_009434_060 Hb_009434_060 Hb_001366_260 Hb_001366_260 Hb_009434_060--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_009434_060--Hb_000820_100 Hb_007543_020 Hb_007543_020 Hb_009434_060--Hb_007543_020 Hb_011472_050 Hb_011472_050 Hb_009434_060--Hb_011472_050 Hb_116784_020 Hb_116784_020 Hb_009434_060--Hb_116784_020 Hb_000173_110 Hb_000173_110 Hb_009434_060--Hb_000173_110 Hb_001366_260--Hb_000820_100 Hb_001366_260--Hb_116784_020 Hb_067472_010 Hb_067472_010 Hb_001366_260--Hb_067472_010 Hb_001366_260--Hb_007543_020 Hb_001366_260--Hb_000173_110 Hb_005092_090 Hb_005092_090 Hb_001366_260--Hb_005092_090 Hb_000820_100--Hb_007543_020 Hb_004520_010 Hb_004520_010 Hb_000820_100--Hb_004520_010 Hb_000820_100--Hb_000173_110 Hb_000820_100--Hb_116784_020 Hb_000123_340 Hb_000123_340 Hb_000820_100--Hb_000123_340 Hb_007543_020--Hb_116784_020 Hb_000060_130 Hb_000060_130 Hb_007543_020--Hb_000060_130 Hb_007543_020--Hb_000123_340 Hb_010565_030 Hb_010565_030 Hb_011472_050--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011472_050--Hb_005542_010 Hb_011472_050--Hb_067472_010 Hb_011472_050--Hb_001366_260 Hb_011472_050--Hb_000173_110 Hb_116784_020--Hb_067472_010 Hb_000352_060 Hb_000352_060 Hb_116784_020--Hb_000352_060 Hb_001468_040 Hb_001468_040 Hb_116784_020--Hb_001468_040 Hb_000027_230 Hb_000027_230 Hb_116784_020--Hb_000027_230 Hb_000173_110--Hb_000123_340 Hb_000173_110--Hb_010565_030 Hb_000173_110--Hb_116784_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0262792 0.550053 0.454934 0.112237 0.0390322 0.0354717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0276095 0.322418 1.50834

CAGE analysis