Hb_009449_090

Information

Type -
Description -
Location Contig9449: 74158-82802
Sequence    

Annotation

kegg
ID rcu:RCOM_0527800
description hypothetical protein
nr
ID XP_012085357.1
description PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
swissprot
ID P49756
description RNA-binding protein 25 OS=Homo sapiens GN=RBM25 PE=1 SV=3
trembl
ID A0A067JRQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17730 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding protein 25 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63248: 75288-82799 , PASA_asmbl_63249: 74394-82799 , PASA_asmbl_63250: 74420-82799 , PASA_asmbl_63251: 79856-82799 , PASA_asmbl_63252: 77560-77702
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009449_090 0.0 - - PREDICTED: RNA-binding protein 25 isoform X1 [Jatropha curcas]
2 Hb_007576_220 0.0554934865 - - PREDICTED: kanadaptin [Jatropha curcas]
3 Hb_005539_040 0.0653342431 - - PREDICTED: RNA-binding protein 25 isoform X3 [Jatropha curcas]
4 Hb_000086_050 0.0657108998 - - PREDICTED: structural maintenance of chromosomes protein 1 [Jatropha curcas]
5 Hb_002571_030 0.075164508 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
6 Hb_000024_120 0.0758676585 - - PREDICTED: uncharacterized protein LOC105122546 isoform X1 [Populus euphratica]
7 Hb_007283_030 0.0775133216 - - PREDICTED: pre-mRNA-processing protein 40C-like [Malus domestica]
8 Hb_007818_040 0.0779526785 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
9 Hb_155159_010 0.0784834766 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 1 [Jatropha curcas]
10 Hb_007576_230 0.0792283365 - - hypothetical protein JCGZ_25616 [Jatropha curcas]
11 Hb_011920_020 0.079269449 - - PREDICTED: uncharacterized protein LOC105645397 [Jatropha curcas]
12 Hb_000327_080 0.0842956157 - - PREDICTED: regulator of nonsense transcripts UPF2 [Jatropha curcas]
13 Hb_002282_060 0.086103442 transcription factor TF Family: bZIP DNA binding protein, putative [Ricinus communis]
14 Hb_000300_250 0.0892955163 - - polyribonucleotide nucleotidyltransferase, putative [Ricinus communis]
15 Hb_001231_090 0.0907588087 - - PREDICTED: CCR4-NOT transcription complex subunit 10 isoform X1 [Jatropha curcas]
16 Hb_002073_280 0.0914012677 - - PREDICTED: phospholipid-transporting ATPase 3 isoform X1 [Jatropha curcas]
17 Hb_005214_150 0.0921355508 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
18 Hb_010661_020 0.0927363828 - - PREDICTED: uncharacterized protein LOC105630767 isoform X1 [Jatropha curcas]
19 Hb_000023_320 0.0940747668 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004032_230 0.0947632281 - - PREDICTED: uncharacterized protein LOC105635143 [Jatropha curcas]

Gene co-expression network

sample Hb_009449_090 Hb_009449_090 Hb_007576_220 Hb_007576_220 Hb_009449_090--Hb_007576_220 Hb_005539_040 Hb_005539_040 Hb_009449_090--Hb_005539_040 Hb_000086_050 Hb_000086_050 Hb_009449_090--Hb_000086_050 Hb_002571_030 Hb_002571_030 Hb_009449_090--Hb_002571_030 Hb_000024_120 Hb_000024_120 Hb_009449_090--Hb_000024_120 Hb_007283_030 Hb_007283_030 Hb_009449_090--Hb_007283_030 Hb_007576_230 Hb_007576_230 Hb_007576_220--Hb_007576_230 Hb_155159_010 Hb_155159_010 Hb_007576_220--Hb_155159_010 Hb_007576_220--Hb_005539_040 Hb_007576_220--Hb_000086_050 Hb_002073_280 Hb_002073_280 Hb_007576_220--Hb_002073_280 Hb_000300_250 Hb_000300_250 Hb_005539_040--Hb_000300_250 Hb_010661_020 Hb_010661_020 Hb_005539_040--Hb_010661_020 Hb_011920_020 Hb_011920_020 Hb_005539_040--Hb_011920_020 Hb_001221_090 Hb_001221_090 Hb_005539_040--Hb_001221_090 Hb_000086_050--Hb_007283_030 Hb_002687_090 Hb_002687_090 Hb_000086_050--Hb_002687_090 Hb_000086_050--Hb_007576_230 Hb_000086_050--Hb_155159_010 Hb_007818_040 Hb_007818_040 Hb_002571_030--Hb_007818_040 Hb_007929_080 Hb_007929_080 Hb_002571_030--Hb_007929_080 Hb_009771_110 Hb_009771_110 Hb_002571_030--Hb_009771_110 Hb_007305_020 Hb_007305_020 Hb_002571_030--Hb_007305_020 Hb_000523_080 Hb_000523_080 Hb_002571_030--Hb_000523_080 Hb_001021_200 Hb_001021_200 Hb_002571_030--Hb_001021_200 Hb_000345_490 Hb_000345_490 Hb_000024_120--Hb_000345_490 Hb_005610_080 Hb_005610_080 Hb_000024_120--Hb_005610_080 Hb_005054_190 Hb_005054_190 Hb_000024_120--Hb_005054_190 Hb_003430_030 Hb_003430_030 Hb_000024_120--Hb_003430_030 Hb_000116_510 Hb_000116_510 Hb_000024_120--Hb_000116_510 Hb_007283_030--Hb_007818_040 Hb_007283_030--Hb_155159_010 Hb_011202_030 Hb_011202_030 Hb_007283_030--Hb_011202_030 Hb_007283_030--Hb_007576_230 Hb_000377_050 Hb_000377_050 Hb_007283_030--Hb_000377_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.2977 66.683 44.3482 20.0049 47.2648 31.2759
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.1024 13.0699 8.53993 30.3216 34.5659

CAGE analysis