Hb_009455_020

Information

Type -
Description -
Location Contig9455: 10777-15882
Sequence    

Annotation

kegg
ID rcu:RCOM_1533790
description hypothetical protein
nr
ID XP_012072846.1
description PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L0D8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05998 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009455_020 0.0 - - PREDICTED: uncharacterized protein LOC105634581 [Jatropha curcas]
2 Hb_007747_210 0.11649976 - - unnamed protein product [Vitis vinifera]
3 Hb_000003_710 0.1178393304 - - PREDICTED: RNA polymerase II-associated factor 1 homolog [Jatropha curcas]
4 Hb_000340_100 0.1221253962 - - PREDICTED: protein PALE CRESS, chloroplastic [Jatropha curcas]
5 Hb_000152_110 0.1225789541 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_004052_170 0.1284481435 - - PREDICTED: pentatricopeptide repeat-containing protein PNM1, mitochondrial [Jatropha curcas]
7 Hb_002799_070 0.1308926775 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
8 Hb_000165_160 0.1310547753 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
9 Hb_000482_040 0.1317102295 - - Protein YME1, putative [Ricinus communis]
10 Hb_001357_020 0.1328176631 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
11 Hb_070256_010 0.1338911732 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105630457 [Jatropha curcas]
12 Hb_042202_030 0.1359516402 - - PREDICTED: uncharacterized protein LOC105647255 [Jatropha curcas]
13 Hb_000019_200 0.1370491884 - - PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
14 Hb_001242_130 0.1375463671 - - PREDICTED: U3 small nucleolar RNA-associated protein 4-like [Jatropha curcas]
15 Hb_001435_030 0.1378623552 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
16 Hb_002078_340 0.1379729778 - - PREDICTED: uncharacterized protein LOC105644820 isoform X2 [Jatropha curcas]
17 Hb_004712_130 0.1390266296 - - PREDICTED: uncharacterized protein LOC105633074 [Jatropha curcas]
18 Hb_005116_050 0.139065901 - - PREDICTED: pentatricopeptide repeat-containing protein At4g02820, mitochondrial isoform X1 [Jatropha curcas]
19 Hb_165928_040 0.1398226527 - - PREDICTED: ERAD-associated E3 ubiquitin-protein ligase component HRD3A [Jatropha curcas]
20 Hb_029888_010 0.1400090229 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_009455_020 Hb_009455_020 Hb_007747_210 Hb_007747_210 Hb_009455_020--Hb_007747_210 Hb_000003_710 Hb_000003_710 Hb_009455_020--Hb_000003_710 Hb_000340_100 Hb_000340_100 Hb_009455_020--Hb_000340_100 Hb_000152_110 Hb_000152_110 Hb_009455_020--Hb_000152_110 Hb_004052_170 Hb_004052_170 Hb_009455_020--Hb_004052_170 Hb_002799_070 Hb_002799_070 Hb_009455_020--Hb_002799_070 Hb_042202_030 Hb_042202_030 Hb_007747_210--Hb_042202_030 Hb_079312_010 Hb_079312_010 Hb_007747_210--Hb_079312_010 Hb_005237_050 Hb_005237_050 Hb_007747_210--Hb_005237_050 Hb_000215_070 Hb_000215_070 Hb_007747_210--Hb_000215_070 Hb_003020_220 Hb_003020_220 Hb_007747_210--Hb_003020_220 Hb_000003_710--Hb_000152_110 Hb_002769_030 Hb_002769_030 Hb_000003_710--Hb_002769_030 Hb_002241_010 Hb_002241_010 Hb_000003_710--Hb_002241_010 Hb_000094_070 Hb_000094_070 Hb_000003_710--Hb_000094_070 Hb_000948_150 Hb_000948_150 Hb_000003_710--Hb_000948_150 Hb_002006_030 Hb_002006_030 Hb_000003_710--Hb_002006_030 Hb_000465_190 Hb_000465_190 Hb_000340_100--Hb_000465_190 Hb_000340_100--Hb_000003_710 Hb_003747_230 Hb_003747_230 Hb_000340_100--Hb_003747_230 Hb_001629_080 Hb_001629_080 Hb_000340_100--Hb_001629_080 Hb_005116_050 Hb_005116_050 Hb_000340_100--Hb_005116_050 Hb_002078_340 Hb_002078_340 Hb_000340_100--Hb_002078_340 Hb_000152_110--Hb_000094_070 Hb_000152_110--Hb_000948_150 Hb_000482_040 Hb_000482_040 Hb_000152_110--Hb_000482_040 Hb_000152_110--Hb_002769_030 Hb_027472_070 Hb_027472_070 Hb_000152_110--Hb_027472_070 Hb_001818_100 Hb_001818_100 Hb_004052_170--Hb_001818_100 Hb_000556_090 Hb_000556_090 Hb_004052_170--Hb_000556_090 Hb_001629_030 Hb_001629_030 Hb_004052_170--Hb_001629_030 Hb_001157_240 Hb_001157_240 Hb_004052_170--Hb_001157_240 Hb_000340_230 Hb_000340_230 Hb_004052_170--Hb_000340_230 Hb_029510_050 Hb_029510_050 Hb_004052_170--Hb_029510_050 Hb_000327_180 Hb_000327_180 Hb_002799_070--Hb_000327_180 Hb_000165_160 Hb_000165_160 Hb_002799_070--Hb_000165_160 Hb_001489_080 Hb_001489_080 Hb_002799_070--Hb_001489_080 Hb_001541_120 Hb_001541_120 Hb_002799_070--Hb_001541_120 Hb_006420_080 Hb_006420_080 Hb_002799_070--Hb_006420_080 Hb_001123_040 Hb_001123_040 Hb_002799_070--Hb_001123_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.8366 1.94 2.73466 1.62317 2.25615 1.30937
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.20072 2.65959 5.83785 4.90433 6.46478

CAGE analysis