Hb_009456_010

Information

Type -
Description -
Location Contig9456: 329-1949
Sequence    

Annotation

kegg
ID rcu:RCOM_0964340
description cinnamoyl-CoA reductase, putative (EC:1.1.1.219)
nr
ID XP_011025486.1
description PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
swissprot
ID Q500U8
description Tetraketide alpha-pyrone reductase 1 OS=Arabidopsis thaliana GN=TKPR1 PE=1 SV=1
trembl
ID A0A067LG77
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16852 PE=4 SV=1
Gene Ontology
ID GO:0045552
description cinnamoyl- reductase 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009456_010 0.0 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
2 Hb_002566_020 0.0426164075 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
3 Hb_002783_180 0.0701179297 - - Tubulin beta-6 chain [Gossypium arboreum]
4 Hb_007370_010 0.0967120467 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
5 Hb_001777_010 0.0972197921 - - -
6 Hb_031224_010 0.0976744335 - - -
7 Hb_000389_100 0.1017416952 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
8 Hb_003633_170 0.1020805549 - - conserved hypothetical protein [Ricinus communis]
9 Hb_141194_020 0.1058806482 - - carbohydrate transporter, putative [Ricinus communis]
10 Hb_000419_140 0.1112158948 - - Aquaporin PIP2.1, putative [Ricinus communis]
11 Hb_008304_050 0.1133696031 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
12 Hb_010264_020 0.1154632811 - - unnamed protein product [Vitis vinifera]
13 Hb_000186_150 0.1162550583 - - PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]
14 Hb_004667_030 0.1163556184 - - hypothetical protein VITISV_034568 [Vitis vinifera]
15 Hb_005332_160 0.1203725078 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
16 Hb_000329_010 0.1221867298 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
17 Hb_001430_040 0.1235398075 - - gamma-tocopherol methyltransferase [Hevea brasiliensis]
18 Hb_001404_070 0.124638823 - - sucrose synthase 4 [Hevea brasiliensis]
19 Hb_003124_050 0.1249460364 - - PREDICTED: uncharacterized protein LOC105641435 [Jatropha curcas]
20 Hb_000152_880 0.1268757986 - - -

Gene co-expression network

sample Hb_009456_010 Hb_009456_010 Hb_002566_020 Hb_002566_020 Hb_009456_010--Hb_002566_020 Hb_002783_180 Hb_002783_180 Hb_009456_010--Hb_002783_180 Hb_007370_010 Hb_007370_010 Hb_009456_010--Hb_007370_010 Hb_001777_010 Hb_001777_010 Hb_009456_010--Hb_001777_010 Hb_031224_010 Hb_031224_010 Hb_009456_010--Hb_031224_010 Hb_000389_100 Hb_000389_100 Hb_009456_010--Hb_000389_100 Hb_002566_020--Hb_002783_180 Hb_002566_020--Hb_031224_010 Hb_003633_170 Hb_003633_170 Hb_002566_020--Hb_003633_170 Hb_002566_020--Hb_000389_100 Hb_002566_020--Hb_007370_010 Hb_008304_050 Hb_008304_050 Hb_002783_180--Hb_008304_050 Hb_004162_140 Hb_004162_140 Hb_002783_180--Hb_004162_140 Hb_002783_180--Hb_000389_100 Hb_000186_150 Hb_000186_150 Hb_002783_180--Hb_000186_150 Hb_007370_010--Hb_003633_170 Hb_003894_180 Hb_003894_180 Hb_007370_010--Hb_003894_180 Hb_169077_030 Hb_169077_030 Hb_007370_010--Hb_169077_030 Hb_000152_570 Hb_000152_570 Hb_007370_010--Hb_000152_570 Hb_007370_010--Hb_031224_010 Hb_000103_300 Hb_000103_300 Hb_007370_010--Hb_000103_300 Hb_000419_140 Hb_000419_140 Hb_001777_010--Hb_000419_140 Hb_000076_280 Hb_000076_280 Hb_001777_010--Hb_000076_280 Hb_001777_010--Hb_002566_020 Hb_000329_010 Hb_000329_010 Hb_001777_010--Hb_000329_010 Hb_001769_070 Hb_001769_070 Hb_001777_010--Hb_001769_070 Hb_031224_010--Hb_003633_170 Hb_031224_010--Hb_000329_010 Hb_002370_050 Hb_002370_050 Hb_031224_010--Hb_002370_050 Hb_002809_080 Hb_002809_080 Hb_031224_010--Hb_002809_080 Hb_000389_100--Hb_008304_050 Hb_000561_040 Hb_000561_040 Hb_000389_100--Hb_000561_040 Hb_000389_100--Hb_031224_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.73739 4.24122 14.8988 0 0.0397597
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0575457 0 5.39242 6.08362

CAGE analysis