Hb_009467_060

Information

Type -
Description -
Location Contig9467: 44887-50353
Sequence    

Annotation

kegg
ID rcu:RCOM_1515380
description Heterochromatin protein, putative
nr
ID XP_012070324.1
description PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
swissprot
ID Q946J8
description Chromo domain-containing protein LHP1 OS=Arabidopsis thaliana GN=LHP1 PE=1 SV=2
trembl
ID A0A067KTQ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02631 PE=4 SV=1
Gene Ontology
ID GO:0005634
description chromo domain-containing protein lhp1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63274: 48314-50156
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009467_060 0.0 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
2 Hb_001141_020 0.051920431 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
3 Hb_003025_110 0.0662795634 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Jatropha curcas]
4 Hb_001199_020 0.0700981793 - - hypothetical protein JCGZ_25565 [Jatropha curcas]
5 Hb_002271_030 0.0742645052 - - Vacuolar protein sorting protein, putative [Ricinus communis]
6 Hb_000025_110 0.0756604922 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
7 Hb_001006_140 0.0762937255 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 19 isoform X2 [Jatropha curcas]
8 Hb_062135_030 0.0764651518 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
9 Hb_023480_010 0.0774421229 - - cellular nucleic acid binding protein, putative [Ricinus communis]
10 Hb_000058_100 0.0774724409 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
11 Hb_000638_120 0.0792492004 - - PREDICTED: 2-oxoisovalerate dehydrogenase subunit alpha 2, mitochondrial-like [Jatropha curcas]
12 Hb_001936_060 0.0793511154 - - pyroglutamyl-peptidase I, putative [Ricinus communis]
13 Hb_001390_110 0.079533472 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
14 Hb_000011_200 0.079584103 - - PREDICTED: 26S protease regulatory subunit 7 isoform X1 [Jatropha curcas]
15 Hb_001124_160 0.0809587543 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
16 Hb_001289_080 0.0814011994 - - PREDICTED: protein YLS9-like [Jatropha curcas]
17 Hb_000020_190 0.0814495318 - - hypothetical protein RCOM_0452240 [Ricinus communis]
18 Hb_011930_160 0.0815120141 - - PREDICTED: tetratricopeptide repeat protein 38-like [Jatropha curcas]
19 Hb_030736_100 0.0836711867 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000618_030 0.0843632989 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]

Gene co-expression network

sample Hb_009467_060 Hb_009467_060 Hb_001141_020 Hb_001141_020 Hb_009467_060--Hb_001141_020 Hb_003025_110 Hb_003025_110 Hb_009467_060--Hb_003025_110 Hb_001199_020 Hb_001199_020 Hb_009467_060--Hb_001199_020 Hb_002271_030 Hb_002271_030 Hb_009467_060--Hb_002271_030 Hb_000025_110 Hb_000025_110 Hb_009467_060--Hb_000025_110 Hb_001006_140 Hb_001006_140 Hb_009467_060--Hb_001006_140 Hb_188063_020 Hb_188063_020 Hb_001141_020--Hb_188063_020 Hb_001141_020--Hb_003025_110 Hb_000883_020 Hb_000883_020 Hb_001141_020--Hb_000883_020 Hb_009548_020 Hb_009548_020 Hb_001141_020--Hb_009548_020 Hb_030736_100 Hb_030736_100 Hb_001141_020--Hb_030736_100 Hb_004410_030 Hb_004410_030 Hb_003025_110--Hb_004410_030 Hb_000011_200 Hb_000011_200 Hb_003025_110--Hb_000011_200 Hb_001946_010 Hb_001946_010 Hb_003025_110--Hb_001946_010 Hb_007575_050 Hb_007575_050 Hb_003025_110--Hb_007575_050 Hb_011930_160 Hb_011930_160 Hb_003025_110--Hb_011930_160 Hb_000617_180 Hb_000617_180 Hb_003025_110--Hb_000617_180 Hb_000058_100 Hb_000058_100 Hb_001199_020--Hb_000058_100 Hb_001199_020--Hb_001006_140 Hb_004724_200 Hb_004724_200 Hb_001199_020--Hb_004724_200 Hb_007441_120 Hb_007441_120 Hb_001199_020--Hb_007441_120 Hb_006922_100 Hb_006922_100 Hb_001199_020--Hb_006922_100 Hb_004055_030 Hb_004055_030 Hb_001199_020--Hb_004055_030 Hb_002271_030--Hb_004410_030 Hb_002271_030--Hb_000011_200 Hb_002271_030--Hb_003025_110 Hb_000225_040 Hb_000225_040 Hb_002271_030--Hb_000225_040 Hb_002271_030--Hb_030736_100 Hb_001493_030 Hb_001493_030 Hb_002271_030--Hb_001493_030 Hb_001444_010 Hb_001444_010 Hb_000025_110--Hb_001444_010 Hb_006252_040 Hb_006252_040 Hb_000025_110--Hb_006252_040 Hb_000618_030 Hb_000618_030 Hb_000025_110--Hb_000618_030 Hb_000679_130 Hb_000679_130 Hb_000025_110--Hb_000679_130 Hb_001599_030 Hb_001599_030 Hb_000025_110--Hb_001599_030 Hb_000212_240 Hb_000212_240 Hb_000025_110--Hb_000212_240 Hb_000051_070 Hb_000051_070 Hb_001006_140--Hb_000051_070 Hb_000038_170 Hb_000038_170 Hb_001006_140--Hb_000038_170 Hb_000120_790 Hb_000120_790 Hb_001006_140--Hb_000120_790 Hb_003952_070 Hb_003952_070 Hb_001006_140--Hb_003952_070 Hb_002518_280 Hb_002518_280 Hb_001006_140--Hb_002518_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.85 7.85754 7.55135 9.22202 16.5757 19.6712
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.694 10.472 13.2256 11.1996 13.1693

CAGE analysis