Hb_009470_010

Information

Type -
Description -
Location Contig9470: 15166-15420
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009470_010 0.0 - - -
2 Hb_000637_090 0.0564039574 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
3 Hb_007677_010 0.0604555391 - - PREDICTED: uncharacterized protein LOC105641028 [Jatropha curcas]
4 Hb_001956_170 0.065770261 - - hypothetical protein POPTR_0001s24950g [Populus trichocarpa]
5 Hb_002186_190 0.0761520772 - - -
6 Hb_009896_010 0.0770250399 - - ABC transporter G family member 15 [Morus notabilis]
7 Hb_003925_010 0.0778284349 - - Polygalacturonase precursor, putative [Ricinus communis]
8 Hb_053058_010 0.0786778361 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000429_070 0.0811999285 - - hypothetical protein POPTR_0006s05480g [Populus trichocarpa]
10 Hb_000485_050 0.0930935084 - - PREDICTED: alpha-dioxygenase 1 [Jatropha curcas]
11 Hb_001401_130 0.093254223 - - Calcium-binding EF-hand family protein, putative [Theobroma cacao]
12 Hb_004162_150 0.096341514 - - hypothetical protein POPTR_0009s00870g [Populus trichocarpa]
13 Hb_001597_040 0.0972588489 - - -
14 Hb_000617_070 0.0984400675 - - hypothetical protein POPTR_0005s02420g [Populus trichocarpa]
15 Hb_027472_250 0.1059688806 - - hypothetical protein POPTR_0007s08150g [Populus trichocarpa]
16 Hb_008493_020 0.1062715937 - - linamarase [Manihot esculenta]
17 Hb_005539_330 0.1098260596 - - PREDICTED: WAT1-related protein At2g39510-like [Jatropha curcas]
18 Hb_103942_010 0.1109754544 - - rab5A-like protein [Trichinella spiralis]
19 Hb_002215_020 0.1131270951 - - hypothetical protein JCGZ_13728 [Jatropha curcas]
20 Hb_015183_090 0.1131502916 - - PREDICTED: 3-ketoacyl-CoA synthase 21-like [Jatropha curcas]

Gene co-expression network

sample Hb_009470_010 Hb_009470_010 Hb_000637_090 Hb_000637_090 Hb_009470_010--Hb_000637_090 Hb_007677_010 Hb_007677_010 Hb_009470_010--Hb_007677_010 Hb_001956_170 Hb_001956_170 Hb_009470_010--Hb_001956_170 Hb_002186_190 Hb_002186_190 Hb_009470_010--Hb_002186_190 Hb_009896_010 Hb_009896_010 Hb_009470_010--Hb_009896_010 Hb_003925_010 Hb_003925_010 Hb_009470_010--Hb_003925_010 Hb_000637_090--Hb_007677_010 Hb_000637_090--Hb_001956_170 Hb_000637_090--Hb_009896_010 Hb_000637_090--Hb_003925_010 Hb_000637_090--Hb_002186_190 Hb_007677_010--Hb_001956_170 Hb_007677_010--Hb_003925_010 Hb_007677_010--Hb_009896_010 Hb_007677_010--Hb_002186_190 Hb_001956_170--Hb_009896_010 Hb_001956_170--Hb_003925_010 Hb_001956_170--Hb_002186_190 Hb_000429_070 Hb_000429_070 Hb_002186_190--Hb_000429_070 Hb_001401_130 Hb_001401_130 Hb_002186_190--Hb_001401_130 Hb_000012_340 Hb_000012_340 Hb_002186_190--Hb_000012_340 Hb_008493_020 Hb_008493_020 Hb_009896_010--Hb_008493_020 Hb_053058_010 Hb_053058_010 Hb_009896_010--Hb_053058_010 Hb_001634_070 Hb_001634_070 Hb_009896_010--Hb_001634_070 Hb_000485_050 Hb_000485_050 Hb_003925_010--Hb_000485_050 Hb_027472_250 Hb_027472_250 Hb_003925_010--Hb_027472_250 Hb_004162_150 Hb_004162_150 Hb_003925_010--Hb_004162_150 Hb_003925_010--Hb_000429_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.27021 32.8674 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.218666 1.29072

CAGE analysis