Hb_009476_070

Information

Type -
Description -
Location Contig9476: 57987-61018
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06980g
description POPTRDRAFT_765584; hypothetical protein
nr
ID XP_012087237.1
description PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
swissprot
ID Q9XFR9
description Gibberellin 2-beta-dioxygenase 2 OS=Arabidopsis thaliana GN=GA2OX2 PE=2 SV=1
trembl
ID A0A067L8J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01251 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63284: 58147-61002 , PASA_asmbl_63285: 59552-59652
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_070 0.0 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
2 Hb_000365_180 0.0691036828 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
3 Hb_138086_010 0.0944448382 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
4 Hb_008806_040 0.1099262695 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
5 Hb_008749_010 0.110939485 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
6 Hb_002774_180 0.1121116574 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_005463_070 0.1144158173 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_000163_180 0.1151084981 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
9 Hb_005867_030 0.1160500281 - - PREDICTED: uncharacterized protein At4g00950 [Jatropha curcas]
10 Hb_002010_100 0.1162604582 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
11 Hb_001989_070 0.1194778672 - - PREDICTED: uncharacterized calcium-binding protein At1g02270 [Jatropha curcas]
12 Hb_000878_090 0.1196370691 - - sucrose-phosphatase family protein [Populus trichocarpa]
13 Hb_001619_020 0.1210160881 - - LRR receptor-like kinase family protein [Medicago truncatula]
14 Hb_007747_160 0.1221622181 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
15 Hb_009907_020 0.1231121783 - - hypothetical protein CICLE_v10009323mg [Citrus clementina]
16 Hb_000482_070 0.1236354986 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g68400 [Jatropha curcas]
17 Hb_070634_010 0.1282888578 - - TMV resistance protein N, putative [Ricinus communis]
18 Hb_177215_020 0.1294991897 - - acc synthase, putative [Ricinus communis]
19 Hb_000152_170 0.1319073355 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
20 Hb_001198_160 0.1326596054 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]

Gene co-expression network

sample Hb_009476_070 Hb_009476_070 Hb_000365_180 Hb_000365_180 Hb_009476_070--Hb_000365_180 Hb_138086_010 Hb_138086_010 Hb_009476_070--Hb_138086_010 Hb_008806_040 Hb_008806_040 Hb_009476_070--Hb_008806_040 Hb_008749_010 Hb_008749_010 Hb_009476_070--Hb_008749_010 Hb_002774_180 Hb_002774_180 Hb_009476_070--Hb_002774_180 Hb_005463_070 Hb_005463_070 Hb_009476_070--Hb_005463_070 Hb_000163_180 Hb_000163_180 Hb_000365_180--Hb_000163_180 Hb_001989_070 Hb_001989_070 Hb_000365_180--Hb_001989_070 Hb_000365_180--Hb_008749_010 Hb_002010_100 Hb_002010_100 Hb_000365_180--Hb_002010_100 Hb_033187_020 Hb_033187_020 Hb_000365_180--Hb_033187_020 Hb_008406_070 Hb_008406_070 Hb_138086_010--Hb_008406_070 Hb_001198_160 Hb_001198_160 Hb_138086_010--Hb_001198_160 Hb_000152_170 Hb_000152_170 Hb_138086_010--Hb_000152_170 Hb_070634_010 Hb_070634_010 Hb_138086_010--Hb_070634_010 Hb_138086_010--Hb_000365_180 Hb_003747_250 Hb_003747_250 Hb_008806_040--Hb_003747_250 Hb_008806_040--Hb_138086_010 Hb_008806_040--Hb_070634_010 Hb_008806_040--Hb_002774_180 Hb_001989_040 Hb_001989_040 Hb_008806_040--Hb_001989_040 Hb_008749_010--Hb_003747_250 Hb_000878_090 Hb_000878_090 Hb_008749_010--Hb_000878_090 Hb_008749_010--Hb_000163_180 Hb_004228_070 Hb_004228_070 Hb_008749_010--Hb_004228_070 Hb_008749_010--Hb_001989_070 Hb_002973_070 Hb_002973_070 Hb_002774_180--Hb_002973_070 Hb_000018_090 Hb_000018_090 Hb_002774_180--Hb_000018_090 Hb_001141_210 Hb_001141_210 Hb_002774_180--Hb_001141_210 Hb_000771_040 Hb_000771_040 Hb_002774_180--Hb_000771_040 Hb_004785_160 Hb_004785_160 Hb_002774_180--Hb_004785_160 Hb_000318_050 Hb_000318_050 Hb_005463_070--Hb_000318_050 Hb_005463_070--Hb_002010_100 Hb_005867_030 Hb_005867_030 Hb_005463_070--Hb_005867_030 Hb_005016_080 Hb_005016_080 Hb_005463_070--Hb_005016_080 Hb_003387_080 Hb_003387_080 Hb_005463_070--Hb_003387_080 Hb_002361_010 Hb_002361_010 Hb_005463_070--Hb_002361_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 13.3633 16.9509 11.8035 0.089155 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 6.02856 4.74188

CAGE analysis