Hb_009476_080

Information

Type -
Description -
Location Contig9476: 64176-82000
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06990g
description POPTRDRAFT_564043; hypothetical protein
nr
ID CDY07619.1
description BnaA03g18920D [Brassica napus]
swissprot
ID Q9LY46
description Protein ESKIMO 1 OS=Arabidopsis thaliana GN=ESK1 PE=1 SV=1
trembl
ID A0A0D3B601
description Uncharacterized protein OS=Brassica oleracea var. oleracea GN=TBL28 PE=4 SV=1
Gene Ontology
ID GO:0050826
description protein eskimo 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63286: 64194-67220 , PASA_asmbl_63287: 76090-76489 , PASA_asmbl_63288: 76646-77200 , PASA_asmbl_63289: 76992-77404 , PASA_asmbl_63290: 77416-77993 , PASA_asmbl_63292: 79837-80291
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_080 0.0 - - BnaA03g18920D [Brassica napus]
2 Hb_002078_180 0.046731016 - - PREDICTED: 65-kDa microtubule-associated protein 8 [Jatropha curcas]
3 Hb_015807_090 0.0514320452 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
4 Hb_003747_160 0.0515457916 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002835_360 0.0556828176 transcription factor TF Family: MYB hypothetical protein POPTR_0015s09430g [Populus trichocarpa]
6 Hb_005686_040 0.0591180623 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001051_060 0.0614617105 - - UDP-glucuronic acid/UDP-N-acetylgalactosamine transporter, putative [Ricinus communis]
8 Hb_000193_320 0.0616410448 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001511_220 0.0649845117 - - hypothetical protein POPTR_0008s06990g [Populus trichocarpa]
10 Hb_001500_090 0.0661871176 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000086_490 0.0681755111 - - cellulose synthase [Populus tomentosa]
12 Hb_001269_160 0.068878423 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000173_240 0.0697391989 - - conserved hypothetical protein [Ricinus communis]
14 Hb_005523_030 0.0742160499 - - PREDICTED: probable galacturonosyltransferase 12 [Jatropha curcas]
15 Hb_011224_070 0.0771482859 - - PREDICTED: solute carrier family 35 member E3 [Jatropha curcas]
16 Hb_001935_060 0.0776419657 - - PREDICTED: metalloendoproteinase 1 [Jatropha curcas]
17 Hb_000413_030 0.0777815723 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
18 Hb_002499_030 0.0783920145 - - receptor-kinase, putative [Ricinus communis]
19 Hb_003058_240 0.0821692576 - - PREDICTED: tubulin beta-5 chain-like [Jatropha curcas]
20 Hb_004225_120 0.0834239517 - - PREDICTED: uncharacterized protein LOC105628059 [Jatropha curcas]

Gene co-expression network

sample Hb_009476_080 Hb_009476_080 Hb_002078_180 Hb_002078_180 Hb_009476_080--Hb_002078_180 Hb_015807_090 Hb_015807_090 Hb_009476_080--Hb_015807_090 Hb_003747_160 Hb_003747_160 Hb_009476_080--Hb_003747_160 Hb_002835_360 Hb_002835_360 Hb_009476_080--Hb_002835_360 Hb_005686_040 Hb_005686_040 Hb_009476_080--Hb_005686_040 Hb_001051_060 Hb_001051_060 Hb_009476_080--Hb_001051_060 Hb_002078_180--Hb_005686_040 Hb_002078_180--Hb_002835_360 Hb_002078_180--Hb_015807_090 Hb_000086_490 Hb_000086_490 Hb_002078_180--Hb_000086_490 Hb_001935_060 Hb_001935_060 Hb_002078_180--Hb_001935_060 Hb_015807_090--Hb_000086_490 Hb_005523_030 Hb_005523_030 Hb_015807_090--Hb_005523_030 Hb_015807_090--Hb_003747_160 Hb_015807_090--Hb_001051_060 Hb_015807_090--Hb_005686_040 Hb_003747_160--Hb_001051_060 Hb_011224_070 Hb_011224_070 Hb_003747_160--Hb_011224_070 Hb_003747_160--Hb_005686_040 Hb_004225_120 Hb_004225_120 Hb_003747_160--Hb_004225_120 Hb_002835_360--Hb_005686_040 Hb_002835_360--Hb_003747_160 Hb_002835_360--Hb_015807_090 Hb_002835_360--Hb_001051_060 Hb_005686_040--Hb_001051_060 Hb_005686_040--Hb_000086_490 Hb_005686_040--Hb_005523_030 Hb_001051_060--Hb_000086_490 Hb_001051_060--Hb_005523_030 Hb_001051_060--Hb_002078_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0366784 1.9239 3.49511 41.4382 0.0734497 0.0139076
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.00903791 0.0346915 0.805628 25.0231

CAGE analysis