Hb_009476_090

Information

Type -
Description -
Location Contig9476: 82929-106993
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07040g
description POPTRDRAFT_765590; E3 ubiquitin ligase family protein
nr
ID XP_012087146.1
description PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
swissprot
ID Q9FFF9
description Anaphase-promoting complex subunit 1 OS=Arabidopsis thaliana GN=APC1 PE=2 SV=1
trembl
ID B9HHR5
description E3 ubiquitin ligase family protein OS=Populus trichocarpa GN=POPTR_0008s07040g PE=4 SV=1
Gene Ontology
ID GO:0005680
description anaphase-promoting complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63294: 83574-87494 , PASA_asmbl_63295: 87615-89446 , PASA_asmbl_63296: 93092-93471 , PASA_asmbl_63297: 96750-97269 , PASA_asmbl_63298: 97433-98873 , PASA_asmbl_63299: 102199-103251
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_090 0.0 - - PREDICTED: anaphase-promoting complex subunit 1 [Jatropha curcas]
2 Hb_000377_050 0.0412697996 - - PREDICTED: sister chromatid cohesion protein PDS5 homolog A isoform X1 [Jatropha curcas]
3 Hb_005832_010 0.0473056435 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]
4 Hb_000703_130 0.0604622579 - - PREDICTED: ATP-dependent RNA helicase DHX36 [Jatropha curcas]
5 Hb_004223_160 0.0633177236 - - PREDICTED: 5'-3' exoribonuclease 3 isoform X2 [Jatropha curcas]
6 Hb_000025_710 0.0706543742 transcription factor TF Family: SNF2 Chromodomain-helicase-DNA-binding 2 [Gossypium arboreum]
7 Hb_001959_270 0.0735710115 - - PREDICTED: DNA mismatch repair protein MSH1, mitochondrial isoform X1 [Jatropha curcas]
8 Hb_000265_090 0.0739363569 - - PREDICTED: flowering time control protein FPA [Jatropha curcas]
9 Hb_001951_170 0.0749362048 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
10 Hb_001953_120 0.076138265 - - PREDICTED: uncharacterized protein LOC105648761 isoform X1 [Jatropha curcas]
11 Hb_011202_030 0.0763692082 - - arsenite-resistance protein, putative [Ricinus communis]
12 Hb_000579_010 0.0764694342 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
13 Hb_007818_030 0.0771119239 - - PREDICTED: transcriptional corepressor SEUSS-like [Jatropha curcas]
14 Hb_000083_070 0.0775022662 - - PREDICTED: transcription initiation factor TFIID subunit 1 isoform X2 [Jatropha curcas]
15 Hb_012184_060 0.0777397765 - - PREDICTED: nuclear pore complex protein NUP1 isoform X1 [Jatropha curcas]
16 Hb_005214_150 0.0784296765 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
17 Hb_002784_010 0.0793998533 - - DNA-directed RNA polymerase I subunit, putative [Ricinus communis]
18 Hb_001133_030 0.0796467973 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
19 Hb_003142_040 0.0797199543 - - Sf3a3 [Gossypium arboreum]
20 Hb_000934_210 0.0801027199 - - suppressor of ty, putative [Ricinus communis]

Gene co-expression network

sample Hb_009476_090 Hb_009476_090 Hb_000377_050 Hb_000377_050 Hb_009476_090--Hb_000377_050 Hb_005832_010 Hb_005832_010 Hb_009476_090--Hb_005832_010 Hb_000703_130 Hb_000703_130 Hb_009476_090--Hb_000703_130 Hb_004223_160 Hb_004223_160 Hb_009476_090--Hb_004223_160 Hb_000025_710 Hb_000025_710 Hb_009476_090--Hb_000025_710 Hb_001959_270 Hb_001959_270 Hb_009476_090--Hb_001959_270 Hb_007283_030 Hb_007283_030 Hb_000377_050--Hb_007283_030 Hb_000377_050--Hb_005832_010 Hb_000377_050--Hb_001959_270 Hb_007818_040 Hb_007818_040 Hb_000377_050--Hb_007818_040 Hb_000377_050--Hb_000703_130 Hb_001904_030 Hb_001904_030 Hb_005832_010--Hb_001904_030 Hb_005832_010--Hb_004223_160 Hb_002007_110 Hb_002007_110 Hb_005832_010--Hb_002007_110 Hb_001951_170 Hb_001951_170 Hb_005832_010--Hb_001951_170 Hb_000172_340 Hb_000172_340 Hb_005832_010--Hb_000172_340 Hb_000265_090 Hb_000265_090 Hb_000703_130--Hb_000265_090 Hb_000176_100 Hb_000176_100 Hb_000703_130--Hb_000176_100 Hb_007818_030 Hb_007818_030 Hb_000703_130--Hb_007818_030 Hb_000579_010 Hb_000579_010 Hb_000703_130--Hb_000579_010 Hb_002687_090 Hb_002687_090 Hb_000703_130--Hb_002687_090 Hb_001953_120 Hb_001953_120 Hb_004223_160--Hb_001953_120 Hb_004223_160--Hb_001951_170 Hb_004223_160--Hb_001904_030 Hb_003142_040 Hb_003142_040 Hb_004223_160--Hb_003142_040 Hb_188063_010 Hb_188063_010 Hb_000025_710--Hb_188063_010 Hb_005402_040 Hb_005402_040 Hb_000025_710--Hb_005402_040 Hb_001191_120 Hb_001191_120 Hb_000025_710--Hb_001191_120 Hb_000025_710--Hb_000176_100 Hb_002333_050 Hb_002333_050 Hb_000025_710--Hb_002333_050 Hb_005542_140 Hb_005542_140 Hb_000025_710--Hb_005542_140 Hb_006573_170 Hb_006573_170 Hb_001959_270--Hb_006573_170 Hb_179154_020 Hb_179154_020 Hb_001959_270--Hb_179154_020 Hb_001492_040 Hb_001492_040 Hb_001959_270--Hb_001492_040 Hb_001959_270--Hb_007818_040 Hb_005214_150 Hb_005214_150 Hb_001959_270--Hb_005214_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.69825 3.91777 1.96936 1.37769 1.89708 2.30311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.900459 0.919061 0.811497 2.65175 2.89619

CAGE analysis