Hb_009476_160

Information

Type -
Description -
Location Contig9476: 154949-155458
Sequence    

Annotation

kegg
ID rcu:RCOM_0838840
description RING-H2 finger protein ATL2N, putative
nr
ID XP_002528317.1
description RING-H2 finger protein ATL2N, putative [Ricinus communis]
swissprot
ID Q9SRM0
description RING-H2 finger protein ATL66 OS=Arabidopsis thaliana GN=ATL66 PE=2 SV=1
trembl
ID B9SQP8
description RING-H2 finger protein ATL2N, putative OS=Ricinus communis GN=RCOM_0838840 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl66

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009476_160 0.0 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
2 Hb_004282_040 0.1317467577 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
3 Hb_000638_180 0.138331714 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
4 Hb_000692_230 0.1401198709 - - phospholipase d delta, putative [Ricinus communis]
5 Hb_004586_230 0.142558595 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002004_010 0.1455768418 - - CBL-interacting protein kinase 9 [Populus trichocarpa]
7 Hb_001016_040 0.1467323063 transcription factor TF Family: Orphans PREDICTED: histidine kinase 1 isoform X1 [Jatropha curcas]
8 Hb_000666_120 0.1468774374 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
9 Hb_000742_260 0.1499620826 - - hypothetical protein RCOM_1336320 [Ricinus communis]
10 Hb_004297_080 0.1509383339 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
11 Hb_000567_220 0.1533557008 - - PREDICTED: uncharacterized protein LOC105116038 [Populus euphratica]
12 Hb_004218_290 0.15421913 transcription factor TF Family: SRS PREDICTED: protein SHI RELATED SEQUENCE 6 isoform X2 [Jatropha curcas]
13 Hb_001269_530 0.1547890093 - - ATP-binding cassette transporter, putative [Ricinus communis]
14 Hb_000732_100 0.1564970218 - - PREDICTED: uncharacterized protein LOC105649440 [Jatropha curcas]
15 Hb_000365_190 0.1571424226 - - PREDICTED: protein LURP-one-related 8 [Jatropha curcas]
16 Hb_000836_210 0.1588495366 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
17 Hb_000816_050 0.1593512113 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
18 Hb_020301_010 0.1595556999 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001999_200 0.1607807936 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
20 Hb_007292_050 0.1608143759 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]

Gene co-expression network

sample Hb_009476_160 Hb_009476_160 Hb_004282_040 Hb_004282_040 Hb_009476_160--Hb_004282_040 Hb_000638_180 Hb_000638_180 Hb_009476_160--Hb_000638_180 Hb_000692_230 Hb_000692_230 Hb_009476_160--Hb_000692_230 Hb_004586_230 Hb_004586_230 Hb_009476_160--Hb_004586_230 Hb_002004_010 Hb_002004_010 Hb_009476_160--Hb_002004_010 Hb_001016_040 Hb_001016_040 Hb_009476_160--Hb_001016_040 Hb_000116_290 Hb_000116_290 Hb_004282_040--Hb_000116_290 Hb_002849_110 Hb_002849_110 Hb_004282_040--Hb_002849_110 Hb_000742_260 Hb_000742_260 Hb_004282_040--Hb_000742_260 Hb_000976_340 Hb_000976_340 Hb_004282_040--Hb_000976_340 Hb_004282_040--Hb_000692_230 Hb_000732_100 Hb_000732_100 Hb_000638_180--Hb_000732_100 Hb_114733_010 Hb_114733_010 Hb_000638_180--Hb_114733_010 Hb_007292_050 Hb_007292_050 Hb_000638_180--Hb_007292_050 Hb_004241_200 Hb_004241_200 Hb_000638_180--Hb_004241_200 Hb_097634_010 Hb_097634_010 Hb_000638_180--Hb_097634_010 Hb_000638_180--Hb_000742_260 Hb_000692_230--Hb_000638_180 Hb_002324_040 Hb_002324_040 Hb_000692_230--Hb_002324_040 Hb_103149_010 Hb_103149_010 Hb_000692_230--Hb_103149_010 Hb_002973_030 Hb_002973_030 Hb_000692_230--Hb_002973_030 Hb_012395_260 Hb_012395_260 Hb_004586_230--Hb_012395_260 Hb_000702_040 Hb_000702_040 Hb_004586_230--Hb_000702_040 Hb_000365_190 Hb_000365_190 Hb_004586_230--Hb_000365_190 Hb_001587_220 Hb_001587_220 Hb_004586_230--Hb_001587_220 Hb_006573_060 Hb_006573_060 Hb_004586_230--Hb_006573_060 Hb_001195_650 Hb_001195_650 Hb_004586_230--Hb_001195_650 Hb_002004_010--Hb_002973_030 Hb_013405_100 Hb_013405_100 Hb_002004_010--Hb_013405_100 Hb_001541_160 Hb_001541_160 Hb_002004_010--Hb_001541_160 Hb_050847_030 Hb_050847_030 Hb_002004_010--Hb_050847_030 Hb_002311_110 Hb_002311_110 Hb_002004_010--Hb_002311_110 Hb_002004_010--Hb_002849_110 Hb_015884_010 Hb_015884_010 Hb_001016_040--Hb_015884_010 Hb_001016_040--Hb_103149_010 Hb_186495_010 Hb_186495_010 Hb_001016_040--Hb_186495_010 Hb_005396_030 Hb_005396_030 Hb_001016_040--Hb_005396_030 Hb_001016_040--Hb_000732_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.11112 3.16285 0.754632 3.30266 0.112028 0.1004
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.173643 0.466 0.958407

CAGE analysis