Hb_009485_020

Information

Type -
Description -
Location Contig9485: 48753-50392
Sequence    

Annotation

kegg
ID rcu:RCOM_0892180
description steroid binding protein, putative (EC:1.3.1.74)
nr
ID XP_012080897.1
description PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
swissprot
ID Q9M2Z4
description Membrane steroid-binding protein 2 OS=Arabidopsis thaliana GN=MSBP2 PE=1 SV=1
trembl
ID A0A067K327
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15246 PE=4 SV=1
Gene Ontology
ID GO:0032440
description membrane steroid-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63335: 48748-50404
cDNA
(Sanger)
(ID:Location)		 007_O06.ab1: 48958-50293 , 032_D21.ab1: 49001-50281 , 051_G03.ab1: 48965-50293

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009485_020 0.0 - - PREDICTED: membrane steroid-binding protein 2-like [Jatropha curcas]
2 Hb_003858_040 0.1056793751 - - hypothetical protein POPTR_0007s14590g [Populus trichocarpa]
3 Hb_001396_280 0.1101013247 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 2 [Jatropha curcas]
4 Hb_029866_100 0.1113907573 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
5 Hb_000733_050 0.1148028714 - - PREDICTED: uncharacterized protein LOC105646910 isoform X2 [Jatropha curcas]
6 Hb_003894_040 0.1174768844 - - nucleotide binding protein, putative [Ricinus communis]
7 Hb_130323_010 0.1195237931 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
8 Hb_000091_060 0.1212801889 - - PREDICTED: galactose oxidase [Jatropha curcas]
9 Hb_002249_120 0.1249690897 - - RNA-binding protein, putative [Ricinus communis]
10 Hb_002000_060 0.1263189893 - - PREDICTED: protein LIKE COV 2 [Jatropha curcas]
11 Hb_002681_170 0.1284053616 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
12 Hb_073973_160 0.1314409811 - - Transmembrane emp24 domain-containing protein 10 precursor, putative [Ricinus communis]
13 Hb_001501_060 0.1321924241 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002044_050 0.1341390978 - - -
15 Hb_162378_010 0.1363493945 - - hypothetical protein JCGZ_20480 [Jatropha curcas]
16 Hb_000376_090 0.1377519814 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
17 Hb_000853_260 0.1425129282 - - PREDICTED: probable galacturonosyltransferase-like 7 [Jatropha curcas]
18 Hb_000392_370 0.1430048321 - - PREDICTED: protein IQ-DOMAIN 31-like [Jatropha curcas]
19 Hb_001050_010 0.14318692 - - Advillin [Gossypium arboreum]
20 Hb_000025_650 0.1449230395 - - exosome complex exonuclease rrp45, putative [Ricinus communis]

Gene co-expression network

sample Hb_009485_020 Hb_009485_020 Hb_003858_040 Hb_003858_040 Hb_009485_020--Hb_003858_040 Hb_001396_280 Hb_001396_280 Hb_009485_020--Hb_001396_280 Hb_029866_100 Hb_029866_100 Hb_009485_020--Hb_029866_100 Hb_000733_050 Hb_000733_050 Hb_009485_020--Hb_000733_050 Hb_003894_040 Hb_003894_040 Hb_009485_020--Hb_003894_040 Hb_130323_010 Hb_130323_010 Hb_009485_020--Hb_130323_010 Hb_000009_480 Hb_000009_480 Hb_003858_040--Hb_000009_480 Hb_073973_160 Hb_073973_160 Hb_003858_040--Hb_073973_160 Hb_001050_010 Hb_001050_010 Hb_003858_040--Hb_001050_010 Hb_000868_060 Hb_000868_060 Hb_003858_040--Hb_000868_060 Hb_000002_490 Hb_000002_490 Hb_003858_040--Hb_000002_490 Hb_003858_040--Hb_001396_280 Hb_001396_280--Hb_029866_100 Hb_028308_010 Hb_028308_010 Hb_001396_280--Hb_028308_010 Hb_029904_020 Hb_029904_020 Hb_001396_280--Hb_029904_020 Hb_000031_280 Hb_000031_280 Hb_001396_280--Hb_000031_280 Hb_000392_370 Hb_000392_370 Hb_001396_280--Hb_000392_370 Hb_009049_020 Hb_009049_020 Hb_001396_280--Hb_009049_020 Hb_001500_110 Hb_001500_110 Hb_029866_100--Hb_001500_110 Hb_012215_010 Hb_012215_010 Hb_029866_100--Hb_012215_010 Hb_029866_100--Hb_000733_050 Hb_002837_060 Hb_002837_060 Hb_029866_100--Hb_002837_060 Hb_000120_550 Hb_000120_550 Hb_029866_100--Hb_000120_550 Hb_002804_020 Hb_002804_020 Hb_000733_050--Hb_002804_020 Hb_000733_050--Hb_002837_060 Hb_116349_060 Hb_116349_060 Hb_000733_050--Hb_116349_060 Hb_000733_050--Hb_003858_040 Hb_002805_060 Hb_002805_060 Hb_003894_040--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_003894_040--Hb_000599_170 Hb_018202_050 Hb_018202_050 Hb_003894_040--Hb_018202_050 Hb_027380_030 Hb_027380_030 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_006915_020 Hb_006915_020 Hb_003894_040--Hb_006915_020 Hb_000544_180 Hb_000544_180 Hb_130323_010--Hb_000544_180 Hb_130323_010--Hb_003858_040 Hb_000300_320 Hb_000300_320 Hb_130323_010--Hb_000300_320 Hb_130323_010--Hb_001396_280 Hb_000983_170 Hb_000983_170 Hb_130323_010--Hb_000983_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
185.619 73.9064 83.0388 169.499 187.928 145.196
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
50.3883 18.2946 25.7311 68.9916 57.8296

CAGE analysis