Hb_009486_010

Information

Type -
Description -
Location Contig9486: 1728-3767
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_010 0.0 - - -
2 Hb_094647_010 0.1623694941 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
3 Hb_002205_050 0.2040979645 - - hypothetical protein JCGZ_03335 [Jatropha curcas]
4 Hb_088774_010 0.2112075421 - - -
5 Hb_002849_040 0.2136441381 - - caax prenyl protease ste24, putative [Ricinus communis]
6 Hb_015930_010 0.2173685801 - - uncharacterized protein LOC100499930 [Glycine max]
7 Hb_088065_010 0.2225386934 - - hypothetical protein glysoja_007934 [Glycine soja]
8 Hb_000270_500 0.232476712 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
9 Hb_000486_060 0.2340819113 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
10 Hb_006455_110 0.2388373575 - - bromodomain-containing protein, putative [Ricinus communis]
11 Hb_000295_100 0.2395963982 - - -
12 Hb_002141_040 0.2396324347 - - -
13 Hb_001722_020 0.2408380944 - - -
14 Hb_001846_050 0.2431932308 - - -
15 Hb_002960_050 0.2472510379 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
16 Hb_005965_010 0.2499043797 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
17 Hb_000414_030 0.2510507462 - - -
18 Hb_007124_010 0.2522215442 - - unnamed protein product [Coffea canephora]
19 Hb_012286_050 0.2543016171 - - PREDICTED: syntaxin-61 [Jatropha curcas]
20 Hb_000523_100 0.255037376 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]

Gene co-expression network

sample Hb_009486_010 Hb_009486_010 Hb_094647_010 Hb_094647_010 Hb_009486_010--Hb_094647_010 Hb_002205_050 Hb_002205_050 Hb_009486_010--Hb_002205_050 Hb_088774_010 Hb_088774_010 Hb_009486_010--Hb_088774_010 Hb_002849_040 Hb_002849_040 Hb_009486_010--Hb_002849_040 Hb_015930_010 Hb_015930_010 Hb_009486_010--Hb_015930_010 Hb_088065_010 Hb_088065_010 Hb_009486_010--Hb_088065_010 Hb_000270_500 Hb_000270_500 Hb_094647_010--Hb_000270_500 Hb_001575_040 Hb_001575_040 Hb_094647_010--Hb_001575_040 Hb_000414_030 Hb_000414_030 Hb_094647_010--Hb_000414_030 Hb_006455_080 Hb_006455_080 Hb_094647_010--Hb_006455_080 Hb_006455_110 Hb_006455_110 Hb_094647_010--Hb_006455_110 Hb_002205_050--Hb_002849_040 Hb_009543_020 Hb_009543_020 Hb_002205_050--Hb_009543_020 Hb_004060_030 Hb_004060_030 Hb_002205_050--Hb_004060_030 Hb_032458_010 Hb_032458_010 Hb_002205_050--Hb_032458_010 Hb_000696_350 Hb_000696_350 Hb_002205_050--Hb_000696_350 Hb_006663_070 Hb_006663_070 Hb_002205_050--Hb_006663_070 Hb_001722_020 Hb_001722_020 Hb_088774_010--Hb_001722_020 Hb_088774_010--Hb_088065_010 Hb_088774_010--Hb_015930_010 Hb_000523_100 Hb_000523_100 Hb_088774_010--Hb_000523_100 Hb_071923_010 Hb_071923_010 Hb_088774_010--Hb_071923_010 Hb_000248_010 Hb_000248_010 Hb_088774_010--Hb_000248_010 Hb_002849_040--Hb_004060_030 Hb_022092_090 Hb_022092_090 Hb_002849_040--Hb_022092_090 Hb_006502_080 Hb_006502_080 Hb_002849_040--Hb_006502_080 Hb_005656_050 Hb_005656_050 Hb_002849_040--Hb_005656_050 Hb_000413_160 Hb_000413_160 Hb_002849_040--Hb_000413_160 Hb_015930_010--Hb_001722_020 Hb_001846_050 Hb_001846_050 Hb_015930_010--Hb_001846_050 Hb_000295_100 Hb_000295_100 Hb_015930_010--Hb_000295_100 Hb_001675_060 Hb_001675_060 Hb_015930_010--Hb_001675_060 Hb_088065_010--Hb_000523_100 Hb_073559_010 Hb_073559_010 Hb_088065_010--Hb_073559_010 Hb_088065_010--Hb_000248_010 Hb_005965_010 Hb_005965_010 Hb_088065_010--Hb_005965_010 Hb_032225_020 Hb_032225_020 Hb_088065_010--Hb_032225_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.4595 0.0409818 0.149513 0.104905 0.13572 1.99421
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.112089 0.352319 0.152387 0.14513 0.336921

CAGE analysis