Hb_009486_040

Information

Type -
Description -
Location Contig9486: 22113-25274
Sequence    

Annotation

kegg
ID rcu:RCOM_0658300
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002526471.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q8LPS6
description Pentatricopeptide repeat-containing protein At1g02150 OS=Arabidopsis thaliana GN=At1g02150 PE=2 SV=2
trembl
ID B9SKK8
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0658300 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g02150

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63339: 22194-25180 , PASA_asmbl_63340: 22338-24916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_040 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000230_290 0.10900552 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_003952_060 0.142311611 - - hypothetical protein POPTR_0016s11000g [Populus trichocarpa]
4 Hb_003025_140 0.1424832614 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000078_080 0.1439944822 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_17040 [Jatropha curcas]
6 Hb_003607_070 0.1506011953 - - PREDICTED: pentatricopeptide repeat-containing protein At5g48910 [Jatropha curcas]
7 Hb_002055_040 0.1532055106 - - PREDICTED: large subunit GTPase 1 homolog [Jatropha curcas]
8 Hb_000705_250 0.1535135029 - - hypothetical protein CICLE_v10017607mg [Citrus clementina]
9 Hb_007820_010 0.1554138113 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: protein FLOWERING LOCUS D [Jatropha curcas]
10 Hb_004398_030 0.1555864472 - - PREDICTED: chloroplast processing peptidase [Jatropha curcas]
11 Hb_006274_050 0.1581103354 - - hypothetical protein VITISV_022618 [Vitis vinifera]
12 Hb_001089_060 0.1585189331 - - PREDICTED: 1-phosphatidylinositol-3-phosphate 5-kinase FAB1A isoform X1 [Jatropha curcas]
13 Hb_000331_490 0.1616088491 - - PREDICTED: radical S-adenosyl methionine domain-containing protein 1, mitochondrial [Jatropha curcas]
14 Hb_000212_190 0.1616724456 - - PREDICTED: phospholipase A(1) LCAT3 isoform X1 [Jatropha curcas]
15 Hb_004218_190 0.1617186309 transcription factor TF Family: SNF2 PREDICTED: F-box protein At3g54460 isoform X1 [Jatropha curcas]
16 Hb_066487_010 0.1617516569 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000365_240 0.1618096365 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33A-like [Jatropha curcas]
18 Hb_000540_130 0.1621908547 transcription factor TF Family: Pseudo ARR-B sensory transduction histidine kinase, putative [Ricinus communis]
19 Hb_000613_010 0.1624676532 - - PREDICTED: uncharacterized protein LOC105647991 [Jatropha curcas]
20 Hb_000186_170 0.1629762933 - - pyrophosphate-dependent phosphofructokinase, partial [Hevea brasiliensis]

Gene co-expression network

sample Hb_009486_040 Hb_009486_040 Hb_000230_290 Hb_000230_290 Hb_009486_040--Hb_000230_290 Hb_003952_060 Hb_003952_060 Hb_009486_040--Hb_003952_060 Hb_003025_140 Hb_003025_140 Hb_009486_040--Hb_003025_140 Hb_000078_080 Hb_000078_080 Hb_009486_040--Hb_000078_080 Hb_003607_070 Hb_003607_070 Hb_009486_040--Hb_003607_070 Hb_002055_040 Hb_002055_040 Hb_009486_040--Hb_002055_040 Hb_000331_490 Hb_000331_490 Hb_000230_290--Hb_000331_490 Hb_001916_090 Hb_001916_090 Hb_000230_290--Hb_001916_090 Hb_021495_020 Hb_021495_020 Hb_000230_290--Hb_021495_020 Hb_001089_060 Hb_001089_060 Hb_000230_290--Hb_001089_060 Hb_007820_010 Hb_007820_010 Hb_000230_290--Hb_007820_010 Hb_000087_140 Hb_000087_140 Hb_003952_060--Hb_000087_140 Hb_001435_030 Hb_001435_030 Hb_003952_060--Hb_001435_030 Hb_002217_260 Hb_002217_260 Hb_003952_060--Hb_002217_260 Hb_036790_080 Hb_036790_080 Hb_003952_060--Hb_036790_080 Hb_001163_060 Hb_001163_060 Hb_003952_060--Hb_001163_060 Hb_003952_060--Hb_002055_040 Hb_114893_040 Hb_114893_040 Hb_003025_140--Hb_114893_040 Hb_163145_030 Hb_163145_030 Hb_003025_140--Hb_163145_030 Hb_011861_050 Hb_011861_050 Hb_003025_140--Hb_011861_050 Hb_005147_080 Hb_005147_080 Hb_003025_140--Hb_005147_080 Hb_010344_020 Hb_010344_020 Hb_003025_140--Hb_010344_020 Hb_000878_030 Hb_000878_030 Hb_003025_140--Hb_000878_030 Hb_000078_080--Hb_000230_290 Hb_000705_250 Hb_000705_250 Hb_000078_080--Hb_000705_250 Hb_000078_080--Hb_003025_140 Hb_001393_010 Hb_001393_010 Hb_000078_080--Hb_001393_010 Hb_011224_100 Hb_011224_100 Hb_000078_080--Hb_011224_100 Hb_002235_200 Hb_002235_200 Hb_003607_070--Hb_002235_200 Hb_001498_010 Hb_001498_010 Hb_003607_070--Hb_001498_010 Hb_012053_090 Hb_012053_090 Hb_003607_070--Hb_012053_090 Hb_004374_110 Hb_004374_110 Hb_003607_070--Hb_004374_110 Hb_012098_070 Hb_012098_070 Hb_003607_070--Hb_012098_070 Hb_000365_240 Hb_000365_240 Hb_003607_070--Hb_000365_240 Hb_002099_080 Hb_002099_080 Hb_002055_040--Hb_002099_080 Hb_002055_040--Hb_000365_240 Hb_011228_010 Hb_011228_010 Hb_002055_040--Hb_011228_010 Hb_000039_150 Hb_000039_150 Hb_002055_040--Hb_000039_150 Hb_002055_040--Hb_007820_010 Hb_000388_090 Hb_000388_090 Hb_002055_040--Hb_000388_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.8289 14.0291 29.3227 24.9287 18.6407 34.7032
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.305 7.86818 54.92 16.8296 80.5395

CAGE analysis