Hb_009486_050

Information

Type -
Description -
Location Contig9486: 28813-30021
Sequence    

Annotation

kegg
ID rcu:RCOM_0658420
description cyclin-dependent protein kinase, putative
nr
ID XP_012083723.1
description PREDICTED: cyclin-U4-1 [Jatropha curcas]
swissprot
ID O80513
description Cyclin-U4-1 OS=Arabidopsis thaliana GN=CYCU4-1 PE=1 SV=1
trembl
ID A0A067JY35
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14652 PE=4 SV=1
Gene Ontology
ID GO:0019901
description cyclin-dependent protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63342: 28806-30272
cDNA
(Sanger)
(ID:Location)		 009_O14.ab1: 28805-30083 , 013_F13.ab1: 28806-30138 , 038_K04.ab1: 28806-30147 , 042_A09.ab1: 28806-30150

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_050 0.0 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
2 Hb_002609_120 0.0630126539 - - hypothetical protein POPTR_0001s25660g [Populus trichocarpa]
3 Hb_000009_270 0.067625057 - - Calmodulin, putative [Ricinus communis]
4 Hb_000005_240 0.0698762171 - - Shugoshin-1, putative [Ricinus communis]
5 Hb_001021_120 0.0717581497 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-4 [Jatropha curcas]
6 Hb_007922_030 0.0727230043 - - PREDICTED: uncharacterized protein LOC105111213 [Populus euphratica]
7 Hb_001638_200 0.0836586326 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 43 [Jatropha curcas]
8 Hb_000156_110 0.0853810284 - - Uncharacterized protein TCM_029490 [Theobroma cacao]
9 Hb_002411_090 0.0867988472 - - PREDICTED: putative RING-H2 finger protein ATL69 [Jatropha curcas]
10 Hb_001079_060 0.0876113263 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
11 Hb_051663_010 0.0881625313 - - receptor-kinase, putative [Ricinus communis]
12 Hb_032920_020 0.0884482273 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_007617_010 0.0894614835 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH63 isoform X1 [Jatropha curcas]
14 Hb_000000_390 0.0915711563 - - PREDICTED: uncharacterized protein LOC105633753 [Jatropha curcas]
15 Hb_001080_190 0.0929663324 transcription factor TF Family: OFP conserved hypothetical protein [Ricinus communis]
16 Hb_001439_080 0.0930756542 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_019516_010 0.0935338 - - PREDICTED: glucan endo-1,3-beta-glucosidase 11-like isoform X2 [Populus euphratica]
18 Hb_031321_020 0.0955143771 - - hypothetical protein POPTR_0003s15520g [Populus trichocarpa]
19 Hb_007221_020 0.0987934387 - - FAD-binding domain-containing family protein [Populus trichocarpa]
20 Hb_008021_060 0.0995662434 - - Squalene monooxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_009486_050 Hb_009486_050 Hb_002609_120 Hb_002609_120 Hb_009486_050--Hb_002609_120 Hb_000009_270 Hb_000009_270 Hb_009486_050--Hb_000009_270 Hb_000005_240 Hb_000005_240 Hb_009486_050--Hb_000005_240 Hb_001021_120 Hb_001021_120 Hb_009486_050--Hb_001021_120 Hb_007922_030 Hb_007922_030 Hb_009486_050--Hb_007922_030 Hb_001638_200 Hb_001638_200 Hb_009486_050--Hb_001638_200 Hb_002609_120--Hb_000009_270 Hb_032920_020 Hb_032920_020 Hb_002609_120--Hb_032920_020 Hb_002609_120--Hb_001638_200 Hb_000156_110 Hb_000156_110 Hb_002609_120--Hb_000156_110 Hb_002609_120--Hb_001021_120 Hb_000009_270--Hb_001021_120 Hb_000009_270--Hb_032920_020 Hb_017434_010 Hb_017434_010 Hb_000009_270--Hb_017434_010 Hb_098315_060 Hb_098315_060 Hb_000009_270--Hb_098315_060 Hb_001674_010 Hb_001674_010 Hb_000009_270--Hb_001674_010 Hb_002411_090 Hb_002411_090 Hb_000005_240--Hb_002411_090 Hb_039222_010 Hb_039222_010 Hb_000005_240--Hb_039222_010 Hb_001080_190 Hb_001080_190 Hb_000005_240--Hb_001080_190 Hb_000005_240--Hb_001021_120 Hb_001079_060 Hb_001079_060 Hb_000005_240--Hb_001079_060 Hb_031321_020 Hb_031321_020 Hb_001021_120--Hb_031321_020 Hb_000134_130 Hb_000134_130 Hb_001021_120--Hb_000134_130 Hb_001021_120--Hb_007922_030 Hb_152910_050 Hb_152910_050 Hb_001021_120--Hb_152910_050 Hb_001021_120--Hb_098315_060 Hb_007221_020 Hb_007221_020 Hb_007922_030--Hb_007221_020 Hb_008021_060 Hb_008021_060 Hb_007922_030--Hb_008021_060 Hb_001652_100 Hb_001652_100 Hb_007922_030--Hb_001652_100 Hb_000058_180 Hb_000058_180 Hb_007922_030--Hb_000058_180 Hb_007922_030--Hb_031321_020 Hb_004635_120 Hb_004635_120 Hb_001638_200--Hb_004635_120 Hb_001439_080 Hb_001439_080 Hb_001638_200--Hb_001439_080 Hb_001638_200--Hb_000009_270 Hb_001638_200--Hb_032920_020 Hb_001638_200--Hb_000156_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.243844 6.35765 5.08599 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0728617 0 0.268044 3.69887

CAGE analysis