Hb_009486_060

Information

Type transcription factor
Description TF Family: Trihelix
Location Contig9486: 32359-33429
Sequence    

Annotation

kegg
ID rcu:RCOM_0658460
description transcription factor, putative
nr
ID XP_012083724.1
description PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
swissprot
ID Q9LJG8
description Trihelix transcription factor ASIL2 OS=Arabidopsis thaliana GN=ASIL2 PE=2 SV=1
trembl
ID A0A067KAP1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14655 PE=4 SV=1
Gene Ontology
ID GO:0003682
description trihelix transcription factor asil2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63344: 32208-33650
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_060 0.0 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
2 Hb_001205_230 0.069521196 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
3 Hb_008221_180 0.0706205994 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
4 Hb_027346_010 0.071991209 - - -
5 Hb_000574_400 0.0770226285 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
6 Hb_002234_170 0.0817083841 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1 [Jatropha curcas]
7 Hb_001671_010 0.0831073106 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
8 Hb_000291_050 0.0839837525 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
9 Hb_000906_100 0.0854183829 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
10 Hb_004225_050 0.086564461 transcription factor TF Family: MYB-related DNA binding protein, putative [Ricinus communis]
11 Hb_001004_060 0.0873719875 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
12 Hb_006649_050 0.0886216738 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
13 Hb_000165_250 0.0892937015 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
14 Hb_000029_050 0.0900458177 - - expressed protein, putative [Ricinus communis]
15 Hb_009503_030 0.0900796494 - - protein dimerization, putative [Ricinus communis]
16 Hb_028912_050 0.0909907719 - - PREDICTED: calmodulin-interacting protein 111 isoform X2 [Jatropha curcas]
17 Hb_001999_290 0.0910396096 - - PREDICTED: ATP-dependent zinc metalloprotease FTSH 7, chloroplastic-like [Jatropha curcas]
18 Hb_001498_010 0.0913604995 - - PREDICTED: uncharacterized protein LOC105648994 [Jatropha curcas]
19 Hb_000352_190 0.0914963188 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 41 [Jatropha curcas]
20 Hb_000009_600 0.0933391011 - - PREDICTED: uncharacterized protein LOC105639637 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_060 Hb_009486_060 Hb_001205_230 Hb_001205_230 Hb_009486_060--Hb_001205_230 Hb_008221_180 Hb_008221_180 Hb_009486_060--Hb_008221_180 Hb_027346_010 Hb_027346_010 Hb_009486_060--Hb_027346_010 Hb_000574_400 Hb_000574_400 Hb_009486_060--Hb_000574_400 Hb_002234_170 Hb_002234_170 Hb_009486_060--Hb_002234_170 Hb_001671_010 Hb_001671_010 Hb_009486_060--Hb_001671_010 Hb_001205_230--Hb_027346_010 Hb_001004_060 Hb_001004_060 Hb_001205_230--Hb_001004_060 Hb_000281_090 Hb_000281_090 Hb_001205_230--Hb_000281_090 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290 Hb_007657_010 Hb_007657_010 Hb_008221_180--Hb_007657_010 Hb_000343_250 Hb_000343_250 Hb_008221_180--Hb_000343_250 Hb_000346_060 Hb_000346_060 Hb_008221_180--Hb_000346_060 Hb_008221_180--Hb_001671_010 Hb_000317_050 Hb_000317_050 Hb_008221_180--Hb_000317_050 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_027346_010--Hb_000281_090 Hb_006816_430 Hb_006816_430 Hb_027346_010--Hb_006816_430 Hb_000291_050 Hb_000291_050 Hb_027346_010--Hb_000291_050 Hb_000574_400--Hb_002234_170 Hb_002783_040 Hb_002783_040 Hb_000574_400--Hb_002783_040 Hb_000574_400--Hb_027346_010 Hb_000574_400--Hb_001205_230 Hb_011671_410 Hb_011671_410 Hb_000574_400--Hb_011671_410 Hb_003494_020 Hb_003494_020 Hb_002234_170--Hb_003494_020 Hb_002234_170--Hb_002783_040 Hb_000049_260 Hb_000049_260 Hb_002234_170--Hb_000049_260 Hb_002798_070 Hb_002798_070 Hb_002234_170--Hb_002798_070 Hb_006649_050 Hb_006649_050 Hb_002234_170--Hb_006649_050 Hb_004225_050 Hb_004225_050 Hb_001671_010--Hb_004225_050 Hb_015941_020 Hb_015941_020 Hb_001671_010--Hb_015941_020 Hb_005496_130 Hb_005496_130 Hb_001671_010--Hb_005496_130 Hb_002725_120 Hb_002725_120 Hb_001671_010--Hb_002725_120 Hb_005686_090 Hb_005686_090 Hb_001671_010--Hb_005686_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.9643 41.8499 24.6127 20.934 44.7111 34.6782
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.2552 34.57 45.4245 28.2751 56.9792

CAGE analysis