Hb_009486_090

Information

Type -
Description -
Location Contig9486: 44405-50168
Sequence    

Annotation

kegg
ID rcu:RCOM_0658490
description RNA binding protein, putative
nr
ID XP_002526479.1
description RNA binding protein, putative [Ricinus communis]
swissprot
ID Q7TP47
description Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus GN=Syncrip PE=2 SV=1
trembl
ID B9SKE9
description RNA binding protein, putative OS=Ricinus communis GN=RCOM_0658490 PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63348: 44349-44487 , PASA_asmbl_63349: 44710-44937 , PASA_asmbl_63350: 45103-50157 , PASA_asmbl_63351: 45223-46264 , PASA_asmbl_63352: 45574-46039
cDNA
(Sanger)
(ID:Location)		 052_I21.ab1: 45223-46272

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_090 0.0 - - RNA binding protein, putative [Ricinus communis]
2 Hb_006031_010 0.0453480497 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X3 [Jatropha curcas]
3 Hb_001377_100 0.0549795896 - - PREDICTED: uncharacterized protein LOC105642863 isoform X1 [Jatropha curcas]
4 Hb_001124_050 0.0605415903 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
5 Hb_000196_060 0.061512845 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
6 Hb_001951_170 0.0689923806 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
7 Hb_009486_170 0.0705055466 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
8 Hb_001133_030 0.0726359713 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
9 Hb_003216_090 0.0742071088 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
10 Hb_000925_090 0.0760972125 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
11 Hb_012244_020 0.0768487994 - - calpain, putative [Ricinus communis]
12 Hb_000009_410 0.0776023263 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]
13 Hb_005186_040 0.0779148334 - - PREDICTED: mediator of RNA polymerase II transcription subunit 13 isoform X2 [Jatropha curcas]
14 Hb_006531_020 0.0779349474 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
15 Hb_000574_530 0.0792053702 - - PREDICTED: pre-mRNA-processing-splicing factor 8 [Jatropha curcas]
16 Hb_123531_010 0.0793547965 - - PREDICTED: nuclear pore complex protein NUP98A isoform X1 [Jatropha curcas]
17 Hb_002357_070 0.0802705587 transcription factor TF Family: PHD PREDICTED: protein strawberry notch homolog 1 [Jatropha curcas]
18 Hb_005563_060 0.0805438507 - - PREDICTED: coatomer subunit alpha-1 [Jatropha curcas]
19 Hb_000035_010 0.0807056604 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
20 Hb_000003_100 0.0812098585 transcription factor TF Family: SNF2 PREDICTED: transcription termination factor 2 isoform X5 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_090 Hb_009486_090 Hb_006031_010 Hb_006031_010 Hb_009486_090--Hb_006031_010 Hb_001377_100 Hb_001377_100 Hb_009486_090--Hb_001377_100 Hb_001124_050 Hb_001124_050 Hb_009486_090--Hb_001124_050 Hb_000196_060 Hb_000196_060 Hb_009486_090--Hb_000196_060 Hb_001951_170 Hb_001951_170 Hb_009486_090--Hb_001951_170 Hb_009486_170 Hb_009486_170 Hb_009486_090--Hb_009486_170 Hb_002007_110 Hb_002007_110 Hb_006031_010--Hb_002007_110 Hb_012244_020 Hb_012244_020 Hb_006031_010--Hb_012244_020 Hb_006031_010--Hb_001377_100 Hb_006031_010--Hb_001951_170 Hb_123531_010 Hb_123531_010 Hb_006031_010--Hb_123531_010 Hb_135572_010 Hb_135572_010 Hb_001377_100--Hb_135572_010 Hb_005186_040 Hb_005186_040 Hb_001377_100--Hb_005186_040 Hb_001377_100--Hb_012244_020 Hb_000059_230 Hb_000059_230 Hb_001377_100--Hb_000059_230 Hb_001124_050--Hb_009486_170 Hb_002521_020 Hb_002521_020 Hb_001124_050--Hb_002521_020 Hb_001124_050--Hb_006031_010 Hb_001133_030 Hb_001133_030 Hb_001124_050--Hb_001133_030 Hb_001124_050--Hb_001951_170 Hb_002391_050 Hb_002391_050 Hb_000196_060--Hb_002391_050 Hb_000196_060--Hb_001377_100 Hb_000925_090 Hb_000925_090 Hb_000196_060--Hb_000925_090 Hb_000196_060--Hb_006031_010 Hb_011174_020 Hb_011174_020 Hb_000196_060--Hb_011174_020 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_005832_010 Hb_005832_010 Hb_001951_170--Hb_005832_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580 Hb_009486_170--Hb_001133_030 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.3558 26.694 11.5041 15.3599 11.2676 15.5677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.28075 6.75473 11.4718 27.1698 28.4518

CAGE analysis