Hb_009486_100

Information

Type -
Description -
Location Contig9486: 53278-55394
Sequence    

Annotation

kegg
ID rcu:RCOM_0658500
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002526480.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q3E6Y3
description Uncharacterized protein At1g28695 OS=Arabidopsis thaliana GN=At1g28695 PE=2 SV=1
trembl
ID B9SKF0
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0658500 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_100 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_000575_110 0.092788363 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
3 Hb_005116_010 0.1127281636 transcription factor TF Family: bHLH PREDICTED: basic helix-loop-helix protein A [Jatropha curcas]
4 Hb_002928_220 0.1144198238 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_056101_010 0.1173272046 - - hypothetical protein POPTR_0391s00200g [Populus trichocarpa]
6 Hb_009812_010 0.1200916122 - - ABC transporter family protein [Hevea brasiliensis]
7 Hb_001454_300 0.1269519436 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_010334_040 0.1287291841 - - PREDICTED: uncharacterized protein LOC105108579 [Populus euphratica]
9 Hb_005010_040 0.1356521577 - - PREDICTED: uncharacterized protein LOC105630824 [Jatropha curcas]
10 Hb_000422_020 0.1390446343 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
11 Hb_006970_100 0.1424973124 - - UDP-glucosyltransferase, putative [Ricinus communis]
12 Hb_074892_010 0.1437250074 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
13 Hb_004712_080 0.1462078382 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
14 Hb_025526_010 0.1470364996 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104452086 [Eucalyptus grandis]
15 Hb_008080_050 0.1483746841 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_000101_360 0.1564142127 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
17 Hb_002542_090 0.1600446962 - - Potassium transporter, putative [Ricinus communis]
18 Hb_002200_060 0.1609753936 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
19 Hb_001369_320 0.1644241083 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
20 Hb_011063_060 0.1659630905 - - PREDICTED: endochitinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_009486_100 Hb_009486_100 Hb_000575_110 Hb_000575_110 Hb_009486_100--Hb_000575_110 Hb_005116_010 Hb_005116_010 Hb_009486_100--Hb_005116_010 Hb_002928_220 Hb_002928_220 Hb_009486_100--Hb_002928_220 Hb_056101_010 Hb_056101_010 Hb_009486_100--Hb_056101_010 Hb_009812_010 Hb_009812_010 Hb_009486_100--Hb_009812_010 Hb_001454_300 Hb_001454_300 Hb_009486_100--Hb_001454_300 Hb_000422_020 Hb_000422_020 Hb_000575_110--Hb_000422_020 Hb_000575_110--Hb_056101_010 Hb_025526_010 Hb_025526_010 Hb_000575_110--Hb_025526_010 Hb_002048_010 Hb_002048_010 Hb_000575_110--Hb_002048_010 Hb_003900_050 Hb_003900_050 Hb_000575_110--Hb_003900_050 Hb_010334_040 Hb_010334_040 Hb_005116_010--Hb_010334_040 Hb_005010_040 Hb_005010_040 Hb_005116_010--Hb_005010_040 Hb_009627_040 Hb_009627_040 Hb_005116_010--Hb_009627_040 Hb_005116_010--Hb_009812_010 Hb_010839_010 Hb_010839_010 Hb_005116_010--Hb_010839_010 Hb_005211_090 Hb_005211_090 Hb_005116_010--Hb_005211_090 Hb_006970_100 Hb_006970_100 Hb_002928_220--Hb_006970_100 Hb_000149_120 Hb_000149_120 Hb_002928_220--Hb_000149_120 Hb_006569_110 Hb_006569_110 Hb_002928_220--Hb_006569_110 Hb_002542_090 Hb_002542_090 Hb_002928_220--Hb_002542_090 Hb_006938_010 Hb_006938_010 Hb_002928_220--Hb_006938_010 Hb_056101_010--Hb_025526_010 Hb_004881_060 Hb_004881_060 Hb_056101_010--Hb_004881_060 Hb_056101_010--Hb_000422_020 Hb_056101_010--Hb_005116_010 Hb_009812_010--Hb_010839_010 Hb_004586_110 Hb_004586_110 Hb_009812_010--Hb_004586_110 Hb_004128_090 Hb_004128_090 Hb_009812_010--Hb_004128_090 Hb_004010_090 Hb_004010_090 Hb_009812_010--Hb_004010_090 Hb_009812_010--Hb_010334_040 Hb_001279_220 Hb_001279_220 Hb_001454_300--Hb_001279_220 Hb_001369_320 Hb_001369_320 Hb_001454_300--Hb_001369_320 Hb_175968_010 Hb_175968_010 Hb_001454_300--Hb_175968_010 Hb_004712_080 Hb_004712_080 Hb_001454_300--Hb_004712_080 Hb_001691_060 Hb_001691_060 Hb_001454_300--Hb_001691_060 Hb_001775_050 Hb_001775_050 Hb_001454_300--Hb_001775_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.276046 0.284705 0.101957 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0371615 0 0 1.76599 0.36443

CAGE analysis