Hb_009486_130

Information

Type -
Description -
Location Contig9486: 74492-78004
Sequence    

Annotation

kegg
ID cic:CICLE_v10021491mg
description hypothetical protein
nr
ID KDO85441.1
description hypothetical protein CISIN_1g023046mg [Citrus sinensis]
swissprot
ID O80507
description Putative casein kinase II subunit beta-4 OS=Arabidopsis thaliana GN=At2g44680 PE=2 SV=1
trembl
ID A0A067HCE1
description Casein kinase II subunit beta OS=Citrus sinensis GN=CISIN_1g023046mg PE=3 SV=1
Gene Ontology
ID GO:0005956
description casein kinase ii subunit beta-4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63355: 74542-77850
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_130 0.0 - - hypothetical protein CISIN_1g023046mg [Citrus sinensis]
2 Hb_000115_330 0.0521353839 - - altered response to gravity (arg1), plant, putative [Ricinus communis]
3 Hb_016065_010 0.0645990052 - - PREDICTED: pentatricopeptide repeat-containing protein At5g08305 [Jatropha curcas]
4 Hb_000431_010 0.0673232521 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
5 Hb_008300_010 0.0711898942 - - PREDICTED: UDP-N-acetylglucosamine transferase subunit ALG13 homolog [Jatropha curcas]
6 Hb_000205_270 0.0735691997 - - PREDICTED: uncharacterized protein LOC105632722 isoform X1 [Jatropha curcas]
7 Hb_005488_010 0.0769466755 - - conserved hypothetical protein [Ricinus communis]
8 Hb_012753_160 0.079122639 - - ara4-interacting protein, putative [Ricinus communis]
9 Hb_002687_110 0.0796373586 - - PREDICTED: uncharacterized WD repeat-containing protein C343.04c isoform X1 [Jatropha curcas]
10 Hb_000329_310 0.0812627765 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
11 Hb_006117_070 0.0835355293 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
12 Hb_004109_190 0.0836636608 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 25-like isoform X2 [Populus euphratica]
13 Hb_000009_160 0.0837189755 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
14 Hb_055062_030 0.0847203071 - - PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like isoform X1 [Jatropha curcas]
15 Hb_001277_330 0.0847357139 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
16 Hb_009838_080 0.0868612692 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
17 Hb_006541_030 0.0870142376 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
18 Hb_000120_680 0.0873234778 - - PREDICTED: uncharacterized protein LOC105628572 [Jatropha curcas]
19 Hb_009666_040 0.0873602519 - - glutathione transferase, putative [Ricinus communis]
20 Hb_001863_390 0.0877837698 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_130 Hb_009486_130 Hb_000115_330 Hb_000115_330 Hb_009486_130--Hb_000115_330 Hb_016065_010 Hb_016065_010 Hb_009486_130--Hb_016065_010 Hb_000431_010 Hb_000431_010 Hb_009486_130--Hb_000431_010 Hb_008300_010 Hb_008300_010 Hb_009486_130--Hb_008300_010 Hb_000205_270 Hb_000205_270 Hb_009486_130--Hb_000205_270 Hb_005488_010 Hb_005488_010 Hb_009486_130--Hb_005488_010 Hb_002477_070 Hb_002477_070 Hb_000115_330--Hb_002477_070 Hb_000029_020 Hb_000029_020 Hb_000115_330--Hb_000029_020 Hb_000115_330--Hb_000205_270 Hb_000115_330--Hb_016065_010 Hb_001811_020 Hb_001811_020 Hb_000115_330--Hb_001811_020 Hb_016065_010--Hb_000205_270 Hb_016065_010--Hb_005488_010 Hb_008453_090 Hb_008453_090 Hb_016065_010--Hb_008453_090 Hb_055062_030 Hb_055062_030 Hb_016065_010--Hb_055062_030 Hb_000009_160 Hb_000009_160 Hb_016065_010--Hb_000009_160 Hb_002687_110 Hb_002687_110 Hb_000431_010--Hb_002687_110 Hb_031862_110 Hb_031862_110 Hb_000431_010--Hb_031862_110 Hb_000431_010--Hb_008300_010 Hb_001277_330 Hb_001277_330 Hb_000431_010--Hb_001277_330 Hb_001140_060 Hb_001140_060 Hb_000431_010--Hb_001140_060 Hb_008300_010--Hb_001140_060 Hb_006117_070 Hb_006117_070 Hb_008300_010--Hb_006117_070 Hb_000479_010 Hb_000479_010 Hb_008300_010--Hb_000479_010 Hb_010174_020 Hb_010174_020 Hb_008300_010--Hb_010174_020 Hb_000205_270--Hb_000009_160 Hb_001109_020 Hb_001109_020 Hb_000205_270--Hb_001109_020 Hb_000205_270--Hb_005488_010 Hb_000329_310 Hb_000329_310 Hb_000205_270--Hb_000329_310 Hb_000444_050 Hb_000444_050 Hb_000205_270--Hb_000444_050 Hb_004899_320 Hb_004899_320 Hb_005488_010--Hb_004899_320 Hb_005488_010--Hb_055062_030 Hb_000836_070 Hb_000836_070 Hb_005488_010--Hb_000836_070 Hb_008289_060 Hb_008289_060 Hb_005488_010--Hb_008289_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.5734 10.6542 11.781 16.8052 38.8352 39.1304
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.0181 62.3204 64.6146 18.4794 19.6871

CAGE analysis