Hb_009486_150

Information

Type -
Description -
Location Contig9486: 84546-86521
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa013350mg
description hypothetical protein
nr
ID KEH16394.1
description 60S ribosomal protein L37a-2 [Medicago truncatula]
swissprot
ID Q9XHE4
description 60S ribosomal protein L37a OS=Gossypium hirsutum GN=RPL37A PE=3 SV=1
trembl
ID A0A072TFU7
description 60S ribosomal protein L37a-2 OS=Medicago truncatula GN=MTR_0199s0040 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l37a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63360: 84506-86473
cDNA
(Sanger)
(ID:Location)		 005_E05.ab1: 84624-86466 , 009_O02.ab1: 84665-86466 , 019_L11.ab1: 84620-86466 , 030_G13.ab1: 84665-86473 , 037_P09.ab1: 84665-86466 , 047_O12.ab1: 84665-86466 , 048_K10.ab1: 84665-86466

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_150 0.0 - - 60S ribosomal protein L37a-2 [Medicago truncatula]
2 Hb_175215_010 0.0777792494 - - hypothetical protein CISIN_1g029605mg [Citrus sinensis]
3 Hb_004052_020 0.102841704 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
4 Hb_021419_020 0.103275211 - - PREDICTED: 60S ribosomal protein L13-1-like [Jatropha curcas]
5 Hb_000565_030 0.1037537793 - - PREDICTED: 40S ribosomal protein S26-3-like [Jatropha curcas]
6 Hb_002301_130 0.1085407248 - - PREDICTED: uncharacterized protein LOC105138897 isoform X3 [Populus euphratica]
7 Hb_007441_210 0.1096189787 - - hypothetical protein PRUPE_ppa013350mg [Prunus persica]
8 Hb_002742_050 0.1108851392 - - hypothetical protein CICLE_v10002863mg [Citrus clementina]
9 Hb_001504_020 0.1126224791 - - 40S ribosomal protein S12A [Hevea brasiliensis]
10 Hb_064264_010 0.113026076 - - hypothetical protein [Zea mays]
11 Hb_047823_010 0.1148222041 - - hypothetical protein CARUB_v10024013mg [Capsella rubella]
12 Hb_000057_070 0.1152510401 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
13 Hb_019249_010 0.1154129744 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
14 Hb_004787_060 0.115562422 - - PREDICTED: 40S ribosomal protein S9-2 [Jatropha curcas]
15 Hb_011004_080 0.1156797416 - - PREDICTED: 60S ribosomal protein L37-3-like [Cucumis sativus]
16 Hb_013405_060 0.1159041465 - - PREDICTED: probable RNA-binding protein 18 isoform X1 [Jatropha curcas]
17 Hb_003528_060 0.1161361838 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
18 Hb_002112_020 0.1186024355 - - 60S ribosomal protein L9, putative [Ricinus communis]
19 Hb_012573_070 0.1194462651 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002374_170 0.1198645872 - - 20S proteasome beta subunit C1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_009486_150 Hb_009486_150 Hb_175215_010 Hb_175215_010 Hb_009486_150--Hb_175215_010 Hb_004052_020 Hb_004052_020 Hb_009486_150--Hb_004052_020 Hb_021419_020 Hb_021419_020 Hb_009486_150--Hb_021419_020 Hb_000565_030 Hb_000565_030 Hb_009486_150--Hb_000565_030 Hb_002301_130 Hb_002301_130 Hb_009486_150--Hb_002301_130 Hb_007441_210 Hb_007441_210 Hb_009486_150--Hb_007441_210 Hb_128048_010 Hb_128048_010 Hb_175215_010--Hb_128048_010 Hb_001504_020 Hb_001504_020 Hb_175215_010--Hb_001504_020 Hb_004787_060 Hb_004787_060 Hb_175215_010--Hb_004787_060 Hb_175215_010--Hb_021419_020 Hb_000926_300 Hb_000926_300 Hb_175215_010--Hb_000926_300 Hb_012753_230 Hb_012753_230 Hb_004052_020--Hb_012753_230 Hb_000057_070 Hb_000057_070 Hb_004052_020--Hb_000057_070 Hb_003058_080 Hb_003058_080 Hb_004052_020--Hb_003058_080 Hb_012573_070 Hb_012573_070 Hb_004052_020--Hb_012573_070 Hb_002900_160 Hb_002900_160 Hb_004052_020--Hb_002900_160 Hb_000948_210 Hb_000948_210 Hb_004052_020--Hb_000948_210 Hb_002811_260 Hb_002811_260 Hb_021419_020--Hb_002811_260 Hb_021419_020--Hb_004787_060 Hb_021419_020--Hb_001504_020 Hb_002112_020 Hb_002112_020 Hb_021419_020--Hb_002112_020 Hb_000286_070 Hb_000286_070 Hb_021419_020--Hb_000286_070 Hb_003292_040 Hb_003292_040 Hb_021419_020--Hb_003292_040 Hb_000157_090 Hb_000157_090 Hb_000565_030--Hb_000157_090 Hb_000565_030--Hb_004052_020 Hb_002742_050 Hb_002742_050 Hb_000565_030--Hb_002742_050 Hb_000565_030--Hb_012573_070 Hb_001314_100 Hb_001314_100 Hb_000565_030--Hb_001314_100 Hb_011004_080 Hb_011004_080 Hb_002301_130--Hb_011004_080 Hb_047823_010 Hb_047823_010 Hb_002301_130--Hb_047823_010 Hb_000331_640 Hb_000331_640 Hb_002301_130--Hb_000331_640 Hb_000062_650 Hb_000062_650 Hb_002301_130--Hb_000062_650 Hb_007044_130 Hb_007044_130 Hb_002301_130--Hb_007044_130 Hb_013405_060 Hb_013405_060 Hb_007441_210--Hb_013405_060 Hb_028841_030 Hb_028841_030 Hb_007441_210--Hb_028841_030 Hb_004363_010 Hb_004363_010 Hb_007441_210--Hb_004363_010 Hb_007441_210--Hb_021419_020 Hb_000742_140 Hb_000742_140 Hb_007441_210--Hb_000742_140 Hb_000084_290 Hb_000084_290 Hb_007441_210--Hb_000084_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
157.833 81.4991 173.173 84.3803 149.497 202.745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
221.28 467.01 52.1695 60.694 41.1437

CAGE analysis