Hb_009486_170

Information

Type -
Description -
Location Contig9486: 144974-152782
Sequence    

Annotation

kegg
ID pop:POPTR_0002s14110g
description POPTRDRAFT_644266; hypothetical protein
nr
ID XP_012083742.1
description PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
swissprot
ID B9FXV5
description Eukaryotic translation initiation factor 4G OS=Oryza sativa subsp. japonica GN=Os07g0555200 PE=2 SV=2
trembl
ID A0A067KAP9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14665 PE=4 SV=1
Gene Ontology
ID GO:0003723
description eukaryotic translation initiation factor 4g

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63362: 145780-152596 , PASA_asmbl_63363: 152330-152684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_170 0.0 - - PREDICTED: eukaryotic translation initiation factor 4G [Jatropha curcas]
2 Hb_001133_030 0.0389470421 - - PREDICTED: MAG2-interacting protein 2-like [Jatropha curcas]
3 Hb_002333_050 0.0455591754 - - PREDICTED: uncharacterized protein LOC105644854 isoform X1 [Jatropha curcas]
4 Hb_003805_040 0.0480771028 - - Sacsin [Glycine soja]
5 Hb_000665_230 0.0524472762 - - PREDICTED: uncharacterized protein LOC105637615 [Jatropha curcas]
6 Hb_007576_210 0.0565079689 - - PREDICTED: protein furry homolog [Jatropha curcas]
7 Hb_000086_690 0.0569590964 - - PREDICTED: splicing factor 3B subunit 1 [Jatropha curcas]
8 Hb_001124_050 0.0592398002 transcription factor TF Family: SNF2 PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
9 Hb_188063_010 0.0601351103 - - hypothetical protein RCOM_1469330 [Ricinus communis]
10 Hb_011689_030 0.0607627835 - - 80 kD MCM3-associated protein, putative [Ricinus communis]
11 Hb_001951_170 0.0629992121 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
12 Hb_002521_020 0.0633180019 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03100, mitochondrial-like isoform X2 [Jatropha curcas]
13 Hb_002909_120 0.0653229552 - - PREDICTED: transcription elongation factor SPT6 [Jatropha curcas]
14 Hb_011202_020 0.0658224377 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 3 isoform X1 [Jatropha curcas]
15 Hb_000925_090 0.0685842474 - - PREDICTED: uncharacterized protein LOC105635805 isoform X1 [Jatropha curcas]
16 Hb_003216_090 0.0693114915 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
17 Hb_012244_020 0.0699927727 - - calpain, putative [Ricinus communis]
18 Hb_009486_090 0.0705055466 - - RNA binding protein, putative [Ricinus communis]
19 Hb_007632_010 0.0714203151 - - PREDICTED: E3 ubiquitin-protein ligase UPL1 isoform X1 [Jatropha curcas]
20 Hb_005832_010 0.0721482391 - - PREDICTED: enhancer of mRNA-decapping protein 4 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_170 Hb_009486_170 Hb_001133_030 Hb_001133_030 Hb_009486_170--Hb_001133_030 Hb_002333_050 Hb_002333_050 Hb_009486_170--Hb_002333_050 Hb_003805_040 Hb_003805_040 Hb_009486_170--Hb_003805_040 Hb_000665_230 Hb_000665_230 Hb_009486_170--Hb_000665_230 Hb_007576_210 Hb_007576_210 Hb_009486_170--Hb_007576_210 Hb_000086_690 Hb_000086_690 Hb_009486_170--Hb_000086_690 Hb_000925_090 Hb_000925_090 Hb_001133_030--Hb_000925_090 Hb_012244_020 Hb_012244_020 Hb_001133_030--Hb_012244_020 Hb_011689_030 Hb_011689_030 Hb_001133_030--Hb_011689_030 Hb_000003_410 Hb_000003_410 Hb_001133_030--Hb_000003_410 Hb_002521_020 Hb_002521_020 Hb_001133_030--Hb_002521_020 Hb_188063_010 Hb_188063_010 Hb_002333_050--Hb_188063_010 Hb_002909_120 Hb_002909_120 Hb_002333_050--Hb_002909_120 Hb_000025_710 Hb_000025_710 Hb_002333_050--Hb_000025_710 Hb_001699_280 Hb_001699_280 Hb_002333_050--Hb_001699_280 Hb_002333_050--Hb_000665_230 Hb_003805_040--Hb_000665_230 Hb_003805_040--Hb_001133_030 Hb_008053_040 Hb_008053_040 Hb_003805_040--Hb_008053_040 Hb_011202_020 Hb_011202_020 Hb_003805_040--Hb_011202_020 Hb_003805_040--Hb_002521_020 Hb_000665_230--Hb_011689_030 Hb_000176_100 Hb_000176_100 Hb_000665_230--Hb_000176_100 Hb_000665_230--Hb_001133_030 Hb_002007_110 Hb_002007_110 Hb_000665_230--Hb_002007_110 Hb_014497_020 Hb_014497_020 Hb_007576_210--Hb_014497_020 Hb_007576_210--Hb_001699_280 Hb_007632_010 Hb_007632_010 Hb_007576_210--Hb_007632_010 Hb_007576_210--Hb_002333_050 Hb_003211_040 Hb_003211_040 Hb_007576_210--Hb_003211_040 Hb_000086_690--Hb_001133_030 Hb_000183_050 Hb_000183_050 Hb_000086_690--Hb_000183_050 Hb_003119_080 Hb_003119_080 Hb_000086_690--Hb_003119_080 Hb_001401_060 Hb_001401_060 Hb_000086_690--Hb_001401_060 Hb_000086_690--Hb_011202_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
18.3213 41.9215 14.5534 23.3392 24.6411 25.4554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.40243 9.92534 14.8736 31.0268 38.021

CAGE analysis