Hb_009486_180

Information

Type -
Description -
Location Contig9486: 153791-158958
Sequence    

Annotation

kegg
ID rcu:RCOM_0534290
description dolichyl glycosyltransferase, putative
nr
ID ACU18138.1
description unknown [Glycine max]
swissprot
ID O80505
description Probable dolichyl pyrophosphate Glc1Man9GlcNAc2 alpha-1,3-glucosyltransferase OS=Arabidopsis thaliana GN=At2g44660 PE=2 SV=3
trembl
ID C6T8I6
description Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1
Gene Ontology
ID GO:0005789
description probable dolichyl pyrophosphate glc1man9 c2 alpha- -glucosyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63364: 153807-155476 , PASA_asmbl_63366: 155969-157212 , PASA_asmbl_63367: 157298-157680
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_180 0.0 - - unknown [Glycine max]
2 Hb_009175_020 0.0538178608 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
3 Hb_001178_070 0.0604636259 - - PREDICTED: BTB/POZ domain-containing protein FBL11 [Jatropha curcas]
4 Hb_000900_030 0.0665837118 - - PREDICTED: WD repeat-containing protein 3 [Jatropha curcas]
5 Hb_000011_230 0.068176562 - - PREDICTED: bifunctional protein FolD 4, chloroplastic-like [Jatropha curcas]
6 Hb_002311_290 0.0697817279 - - PREDICTED: pumilio homolog 24 [Jatropha curcas]
7 Hb_001062_010 0.0714148104 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
8 Hb_002631_170 0.0726925692 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 36 [Jatropha curcas]
9 Hb_006198_120 0.077580582 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
10 Hb_000023_330 0.0782189019 - - RNA recognition motif-containing family protein [Populus trichocarpa]
11 Hb_104061_020 0.0784114003 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
12 Hb_000613_050 0.0807146496 - - PREDICTED: uncharacterized protein LOC105641544 isoform X2 [Jatropha curcas]
13 Hb_001235_140 0.0808138615 - - PREDICTED: protein arginine N-methyltransferase 1.6 [Jatropha curcas]
14 Hb_001343_040 0.0812130916 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
15 Hb_164544_010 0.0819375203 - - PREDICTED: protein arginine N-methyltransferase 1.5 isoform X2 [Jatropha curcas]
16 Hb_002681_090 0.0830237221 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
17 Hb_000190_120 0.0831451036 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
18 Hb_002815_030 0.0832706542 - - hypothetical protein CISIN_1g0095162mg, partial [Citrus sinensis]
19 Hb_002107_070 0.0842892514 - - hypothetical protein RCOM_1598630 [Ricinus communis]
20 Hb_000369_130 0.0846335191 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_180 Hb_009486_180 Hb_009175_020 Hb_009175_020 Hb_009486_180--Hb_009175_020 Hb_001178_070 Hb_001178_070 Hb_009486_180--Hb_001178_070 Hb_000900_030 Hb_000900_030 Hb_009486_180--Hb_000900_030 Hb_000011_230 Hb_000011_230 Hb_009486_180--Hb_000011_230 Hb_002311_290 Hb_002311_290 Hb_009486_180--Hb_002311_290 Hb_001062_010 Hb_001062_010 Hb_009486_180--Hb_001062_010 Hb_002329_040 Hb_002329_040 Hb_009175_020--Hb_002329_040 Hb_000190_120 Hb_000190_120 Hb_009175_020--Hb_000190_120 Hb_000429_220 Hb_000429_220 Hb_009175_020--Hb_000429_220 Hb_123903_010 Hb_123903_010 Hb_009175_020--Hb_123903_010 Hb_002107_070 Hb_002107_070 Hb_009175_020--Hb_002107_070 Hb_000205_100 Hb_000205_100 Hb_001178_070--Hb_000205_100 Hb_001178_070--Hb_000011_230 Hb_000613_050 Hb_000613_050 Hb_001178_070--Hb_000613_050 Hb_004954_070 Hb_004954_070 Hb_001178_070--Hb_004954_070 Hb_000181_400 Hb_000181_400 Hb_001178_070--Hb_000181_400 Hb_000900_030--Hb_001062_010 Hb_000900_030--Hb_009175_020 Hb_000441_120 Hb_000441_120 Hb_000900_030--Hb_000441_120 Hb_004267_040 Hb_004267_040 Hb_000900_030--Hb_004267_040 Hb_000900_030--Hb_000011_230 Hb_000011_230--Hb_000190_120 Hb_000011_230--Hb_004954_070 Hb_000011_230--Hb_009175_020 Hb_004412_010 Hb_004412_010 Hb_000011_230--Hb_004412_010 Hb_000084_120 Hb_000084_120 Hb_000011_230--Hb_000084_120 Hb_007657_020 Hb_007657_020 Hb_002311_290--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_002311_290--Hb_002681_090 Hb_000603_030 Hb_000603_030 Hb_002311_290--Hb_000603_030 Hb_002311_290--Hb_001062_010 Hb_002631_170 Hb_002631_170 Hb_002311_290--Hb_002631_170 Hb_000227_220 Hb_000227_220 Hb_002311_290--Hb_000227_220 Hb_009976_020 Hb_009976_020 Hb_001062_010--Hb_009976_020 Hb_001343_040 Hb_001343_040 Hb_001062_010--Hb_001343_040 Hb_002815_030 Hb_002815_030 Hb_001062_010--Hb_002815_030 Hb_001062_010--Hb_009175_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.03266 4.47413 2.59166 4.00659 6.65851 6.13343
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.55732 4.19125 2.4505 7.08906 4.225

CAGE analysis