Hb_009486_190

Information

Type -
Description -
Location Contig9486: 161327-163569
Sequence    

Annotation

kegg
ID rcu:RCOM_0658600
description ATP binding protein, putative (EC:2.7.12.2)
nr
ID XP_002526490.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q9LTC0
description Probable receptor-like protein kinase At5g47070 OS=Arabidopsis thaliana GN=At5g47070 PE=1 SV=1
trembl
ID B9SKG0
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0658600 PE=3 SV=1
Gene Ontology
ID GO:0004672
description probable receptor-like protein kinase at5g47070

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63369: 161190-161502
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_190 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_002798_060 0.1230844607 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
3 Hb_000196_090 0.1258534877 - - axonemal dynein light chain, putative [Ricinus communis]
4 Hb_016604_020 0.1360462438 - - -
5 Hb_033772_050 0.1513314162 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
6 Hb_002540_030 0.1519846729 - - hypothetical protein 32 [Hevea brasiliensis]
7 Hb_002609_280 0.1520764337 - - villin 1-4, putative [Ricinus communis]
8 Hb_023536_010 0.1538714045 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
9 Hb_001329_210 0.1584917 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
10 Hb_004607_150 0.1590363883 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
11 Hb_000264_090 0.1618647485 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
12 Hb_002053_060 0.163935394 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
13 Hb_000326_060 0.1660230358 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
14 Hb_003992_080 0.1660873485 - - PREDICTED: protein LURP-one-related 5 [Jatropha curcas]
15 Hb_002182_060 0.1662774146 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATXR6 [Jatropha curcas]
16 Hb_000179_050 0.1668434014 - - 40S ribosomal protein S17A [Hevea brasiliensis]
17 Hb_003906_100 0.1701954994 - - hypothetical protein JCGZ_26174 [Jatropha curcas]
18 Hb_002794_030 0.1716632091 - - hypothetical protein JCGZ_20185 [Jatropha curcas]
19 Hb_005568_080 0.1730121581 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002471_160 0.1737891404 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein 4-like [Populus euphratica]

Gene co-expression network

sample Hb_009486_190 Hb_009486_190 Hb_002798_060 Hb_002798_060 Hb_009486_190--Hb_002798_060 Hb_000196_090 Hb_000196_090 Hb_009486_190--Hb_000196_090 Hb_016604_020 Hb_016604_020 Hb_009486_190--Hb_016604_020 Hb_033772_050 Hb_033772_050 Hb_009486_190--Hb_033772_050 Hb_002540_030 Hb_002540_030 Hb_009486_190--Hb_002540_030 Hb_002609_280 Hb_002609_280 Hb_009486_190--Hb_002609_280 Hb_004607_150 Hb_004607_150 Hb_002798_060--Hb_004607_150 Hb_008959_030 Hb_008959_030 Hb_002798_060--Hb_008959_030 Hb_004012_010 Hb_004012_010 Hb_002798_060--Hb_004012_010 Hb_023536_010 Hb_023536_010 Hb_002798_060--Hb_023536_010 Hb_000599_140 Hb_000599_140 Hb_002798_060--Hb_000599_140 Hb_002794_030 Hb_002794_030 Hb_000196_090--Hb_002794_030 Hb_000196_090--Hb_002540_030 Hb_000196_090--Hb_002609_280 Hb_007672_010 Hb_007672_010 Hb_000196_090--Hb_007672_010 Hb_000261_460 Hb_000261_460 Hb_000196_090--Hb_000261_460 Hb_001329_210 Hb_001329_210 Hb_000196_090--Hb_001329_210 Hb_002053_060 Hb_002053_060 Hb_016604_020--Hb_002053_060 Hb_016604_020--Hb_002609_280 Hb_003216_100 Hb_003216_100 Hb_016604_020--Hb_003216_100 Hb_002182_060 Hb_002182_060 Hb_016604_020--Hb_002182_060 Hb_003992_080 Hb_003992_080 Hb_016604_020--Hb_003992_080 Hb_000264_090 Hb_000264_090 Hb_016604_020--Hb_000264_090 Hb_000363_140 Hb_000363_140 Hb_033772_050--Hb_000363_140 Hb_033772_050--Hb_003992_080 Hb_005568_080 Hb_005568_080 Hb_033772_050--Hb_005568_080 Hb_000326_060 Hb_000326_060 Hb_033772_050--Hb_000326_060 Hb_004129_150 Hb_004129_150 Hb_033772_050--Hb_004129_150 Hb_014720_080 Hb_014720_080 Hb_002540_030--Hb_014720_080 Hb_010172_070 Hb_010172_070 Hb_002540_030--Hb_010172_070 Hb_000922_270 Hb_000922_270 Hb_002540_030--Hb_000922_270 Hb_007666_020 Hb_007666_020 Hb_002540_030--Hb_007666_020 Hb_003893_090 Hb_003893_090 Hb_002540_030--Hb_003893_090 Hb_001538_100 Hb_001538_100 Hb_002540_030--Hb_001538_100 Hb_002609_280--Hb_000264_090 Hb_007101_130 Hb_007101_130 Hb_002609_280--Hb_007101_130 Hb_002609_280--Hb_007672_010 Hb_000030_100 Hb_000030_100 Hb_002609_280--Hb_000030_100 Hb_002609_280--Hb_002182_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.31446 2.73659 0.124079 0.613563 1.21146 1.86148
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.15859 6.81304 4.45872 1.7161 0

CAGE analysis