Hb_009486_200

Information

Type -
Description -
Location Contig9486: 164537-167700
Sequence    

Annotation

kegg
ID rcu:RCOM_0658610
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012083747.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
swissprot
ID Q9LFC5
description Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
trembl
ID B9SKG1
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0658610 PE=4 SV=1
Gene Ontology
ID GO:0005515
description pentatricopeptide repeat-containing protein at1g09900-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63373: 166495-166661 , PASA_asmbl_63376: 168088-168343
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009486_200 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
2 Hb_002311_040 0.0694671273 - - hypothetical protein JCGZ_18966 [Jatropha curcas]
3 Hb_008500_010 0.0757125373 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17210 [Jatropha curcas]
4 Hb_004143_130 0.0798134349 - - PREDICTED: BEACH domain-containing protein lvsC [Jatropha curcas]
5 Hb_012656_030 0.0875723749 transcription factor TF Family: PHD PREDICTED: protein CHROMATIN REMODELING 4 isoform X1 [Jatropha curcas]
6 Hb_002678_020 0.0898502199 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090-like [Jatropha curcas]
7 Hb_000204_210 0.0900569353 - - PREDICTED: uncharacterized protein LOC105639237 [Jatropha curcas]
8 Hb_001584_150 0.0904166897 - - PREDICTED: putative pentatricopeptide repeat-containing protein At5g40405 [Jatropha curcas]
9 Hb_000890_050 0.0913198349 - - PREDICTED: uncharacterized protein LOC105631800 [Jatropha curcas]
10 Hb_002942_100 0.0918049928 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61990, mitochondrial [Jatropha curcas]
11 Hb_000270_670 0.0920866155 transcription factor TF Family: IWS1 PREDICTED: uncharacterized protein LOC105640420 [Jatropha curcas]
12 Hb_004117_310 0.0937539679 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
13 Hb_000140_230 0.0955596522 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
14 Hb_002636_050 0.095629671 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g68930 [Jatropha curcas]
15 Hb_168697_010 0.0958383804 - - hypothetical protein JCGZ_16772 [Jatropha curcas]
16 Hb_004684_010 0.0967256647 - - PREDICTED: triacylglycerol lipase SDP1 [Jatropha curcas]
17 Hb_006718_020 0.0968329207 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
18 Hb_015807_070 0.0984225838 - - PREDICTED: autophagy-related protein 18f [Jatropha curcas]
19 Hb_000007_450 0.0992703229 - - PREDICTED: tRNA(adenine(34)) deaminase, chloroplastic [Jatropha curcas]
20 Hb_001700_040 0.0998827713 - - PREDICTED: H/ACA ribonucleoprotein complex non-core subunit NAF1 [Jatropha curcas]

Gene co-expression network

sample Hb_009486_200 Hb_009486_200 Hb_002311_040 Hb_002311_040 Hb_009486_200--Hb_002311_040 Hb_008500_010 Hb_008500_010 Hb_009486_200--Hb_008500_010 Hb_004143_130 Hb_004143_130 Hb_009486_200--Hb_004143_130 Hb_012656_030 Hb_012656_030 Hb_009486_200--Hb_012656_030 Hb_002678_020 Hb_002678_020 Hb_009486_200--Hb_002678_020 Hb_000204_210 Hb_000204_210 Hb_009486_200--Hb_000204_210 Hb_000723_130 Hb_000723_130 Hb_002311_040--Hb_000723_130 Hb_002942_100 Hb_002942_100 Hb_002311_040--Hb_002942_100 Hb_004684_010 Hb_004684_010 Hb_002311_040--Hb_004684_010 Hb_002311_040--Hb_008500_010 Hb_001198_100 Hb_001198_100 Hb_002311_040--Hb_001198_100 Hb_006316_040 Hb_006316_040 Hb_008500_010--Hb_006316_040 Hb_001584_150 Hb_001584_150 Hb_008500_010--Hb_001584_150 Hb_008500_010--Hb_012656_030 Hb_004724_060 Hb_004724_060 Hb_008500_010--Hb_004724_060 Hb_015807_070 Hb_015807_070 Hb_008500_010--Hb_015807_070 Hb_000028_280 Hb_000028_280 Hb_004143_130--Hb_000028_280 Hb_004143_130--Hb_002942_100 Hb_003253_040 Hb_003253_040 Hb_004143_130--Hb_003253_040 Hb_010174_110 Hb_010174_110 Hb_004143_130--Hb_010174_110 Hb_002740_110 Hb_002740_110 Hb_004143_130--Hb_002740_110 Hb_004032_380 Hb_004032_380 Hb_004143_130--Hb_004032_380 Hb_014267_010 Hb_014267_010 Hb_012656_030--Hb_014267_010 Hb_000318_390 Hb_000318_390 Hb_012656_030--Hb_000318_390 Hb_000035_290 Hb_000035_290 Hb_012656_030--Hb_000035_290 Hb_001268_350 Hb_001268_350 Hb_012656_030--Hb_001268_350 Hb_003440_050 Hb_003440_050 Hb_012656_030--Hb_003440_050 Hb_001507_020 Hb_001507_020 Hb_002678_020--Hb_001507_020 Hb_007483_100 Hb_007483_100 Hb_002678_020--Hb_007483_100 Hb_000427_050 Hb_000427_050 Hb_002678_020--Hb_000427_050 Hb_002678_020--Hb_000204_210 Hb_000000_250 Hb_000000_250 Hb_002678_020--Hb_000000_250 Hb_002678_020--Hb_002311_040 Hb_000204_210--Hb_001584_150 Hb_000204_210--Hb_008500_010 Hb_000204_210--Hb_001507_020 Hb_001141_390 Hb_001141_390 Hb_000204_210--Hb_001141_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.35323 3.24664 1.02016 1.14028 1.84714 3.85757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86581 1.71803 4.36656 2.52015 2.31794

CAGE analysis