Hb_009491_040

Information

Type -
Description -
Location Contig9491: 62914-66213
Sequence    

Annotation

kegg
ID cit:102617255
description uncharacterized LOC102617255
nr
ID XP_012075763.1
description PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
swissprot
ID P27524
description Chlorophyll a-b binding protein CP24 10A, chloroplastic OS=Solanum lycopersicum GN=CAP10A PE=3 SV=1
trembl
ID M5Y0P9
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015156mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009491_040 0.0 - - PREDICTED: uncharacterized protein LOC105636967 [Jatropha curcas]
2 Hb_000934_270 0.1420586286 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
3 Hb_000576_040 0.1498916737 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
4 Hb_000479_130 0.1555829667 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
5 Hb_006922_030 0.1626173227 - - ubiquitin, putative [Ricinus communis]
6 Hb_000173_230 0.1703152795 - - PREDICTED: pentatricopeptide repeat-containing protein At5g19020, mitochondrial [Jatropha curcas]
7 Hb_000297_200 0.1728718823 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33760-like [Vitis vinifera]
8 Hb_001493_180 0.173682682 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
9 Hb_010172_050 0.1737827381 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065 [Jatropha curcas]
10 Hb_007416_270 0.1744318134 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
11 Hb_004306_060 0.1752191132 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
12 Hb_001085_170 0.1754659612 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 2 isoform X1 [Jatropha curcas]
13 Hb_000307_030 0.1757516392 - - PREDICTED: pentatricopeptide repeat-containing protein At5g40410, mitochondrial [Jatropha curcas]
14 Hb_001322_050 0.1764627574 - - PREDICTED: pentatricopeptide repeat-containing protein At4g16835, mitochondrial [Jatropha curcas]
15 Hb_007483_100 0.1767785268 - - hypothetical protein POPTR_0001s34330g [Populus trichocarpa]
16 Hb_000997_400 0.178762775 - - PREDICTED: pentatricopeptide repeat-containing protein At1g50270 [Jatropha curcas]
17 Hb_005532_060 0.1790257377 - - PREDICTED: pentatricopeptide repeat-containing protein At2g20540-like [Jatropha curcas]
18 Hb_004128_180 0.179045964 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_011242_040 0.179161907 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 1 isoform X1 [Jatropha curcas]
20 Hb_000236_140 0.1798041322 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_009491_040 Hb_009491_040 Hb_000934_270 Hb_000934_270 Hb_009491_040--Hb_000934_270 Hb_000576_040 Hb_000576_040 Hb_009491_040--Hb_000576_040 Hb_000479_130 Hb_000479_130 Hb_009491_040--Hb_000479_130 Hb_006922_030 Hb_006922_030 Hb_009491_040--Hb_006922_030 Hb_000173_230 Hb_000173_230 Hb_009491_040--Hb_000173_230 Hb_000297_200 Hb_000297_200 Hb_009491_040--Hb_000297_200 Hb_010172_050 Hb_010172_050 Hb_000934_270--Hb_010172_050 Hb_178968_110 Hb_178968_110 Hb_000934_270--Hb_178968_110 Hb_000022_250 Hb_000022_250 Hb_000934_270--Hb_000022_250 Hb_003266_130 Hb_003266_130 Hb_000934_270--Hb_003266_130 Hb_029584_130 Hb_029584_130 Hb_000934_270--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000934_270--Hb_000007_150 Hb_004306_060 Hb_004306_060 Hb_000576_040--Hb_004306_060 Hb_152439_020 Hb_152439_020 Hb_000576_040--Hb_152439_020 Hb_000576_040--Hb_000479_130 Hb_119600_040 Hb_119600_040 Hb_000576_040--Hb_119600_040 Hb_000193_250 Hb_000193_250 Hb_000576_040--Hb_000193_250 Hb_000576_040--Hb_000297_200 Hb_000479_130--Hb_004306_060 Hb_000236_140 Hb_000236_140 Hb_000479_130--Hb_000236_140 Hb_007416_270 Hb_007416_270 Hb_000479_130--Hb_007416_270 Hb_000479_130--Hb_000934_270 Hb_000172_560 Hb_000172_560 Hb_000479_130--Hb_000172_560 Hb_007075_050 Hb_007075_050 Hb_000479_130--Hb_007075_050 Hb_001085_170 Hb_001085_170 Hb_006922_030--Hb_001085_170 Hb_002006_090 Hb_002006_090 Hb_006922_030--Hb_002006_090 Hb_006922_030--Hb_007416_270 Hb_000001_140 Hb_000001_140 Hb_006922_030--Hb_000001_140 Hb_008695_210 Hb_008695_210 Hb_006922_030--Hb_008695_210 Hb_000614_230 Hb_000614_230 Hb_006922_030--Hb_000614_230 Hb_188279_010 Hb_188279_010 Hb_000173_230--Hb_188279_010 Hb_009048_040 Hb_009048_040 Hb_000173_230--Hb_009048_040 Hb_000173_230--Hb_000934_270 Hb_001675_180 Hb_001675_180 Hb_000173_230--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000173_230--Hb_085781_010 Hb_013405_030 Hb_013405_030 Hb_000173_230--Hb_013405_030 Hb_000997_400 Hb_000997_400 Hb_000297_200--Hb_000997_400 Hb_000457_150 Hb_000457_150 Hb_000297_200--Hb_000457_150 Hb_000297_200--Hb_029584_130 Hb_000935_050 Hb_000935_050 Hb_000297_200--Hb_000935_050 Hb_000297_200--Hb_000007_150 Hb_000059_220 Hb_000059_220 Hb_000297_200--Hb_000059_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.162684 0.0637089 0.0168017 0.0387698 0.0435256 0.139009
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.05138 0.121229 0.297301 0.016255 0.0826024

CAGE analysis