Hb_009493_010

Information

Type -
Description -
Location Contig9493: 30602-33158
Sequence    

Annotation

kegg
ID rcu:RCOM_0553220
description Minor allergen Alt a, putative
nr
ID XP_002525103.1
description Minor allergen Alt a, putative [Ricinus communis]
swissprot
ID O23207
description Probable NAD(P)H dehydrogenase (quinone) FQR1-like 2 OS=Arabidopsis thaliana GN=At4g36750 PE=1 SV=1
trembl
ID B9SGI4
description Minor allergen Alt a, putative OS=Ricinus communis GN=RCOM_0553220 PE=4 SV=1
Gene Ontology
ID GO:0010181
description probable nad h dehydrogenase fqr1-like 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009493_010 0.0 - - Minor allergen Alt a, putative [Ricinus communis]
2 Hb_023536_010 0.1249373196 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
3 Hb_010897_030 0.1626354523 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002909_060 0.1659037915 - - 3-5 exonuclease, putative [Ricinus communis]
5 Hb_002600_100 0.1686505554 - - PREDICTED: putative endo-1,3(4)-beta-glucanase 2 [Jatropha curcas]
6 Hb_003893_090 0.1703828803 - - Alpha-1,4-glucan-protein synthase [UDP-forming], putative [Ricinus communis]
7 Hb_000635_140 0.1721271629 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
8 Hb_002540_030 0.173016388 - - hypothetical protein 32 [Hevea brasiliensis]
9 Hb_000260_580 0.1747506984 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000086_060 0.176537575 - - PREDICTED: TOM1-like protein 2 isoform X2 [Populus euphratica]
11 Hb_001047_150 0.1774324943 - - PREDICTED: NF-kappa-B-activating protein [Jatropha curcas]
12 Hb_034350_010 0.1774371486 - - PREDICTED: TMV resistance protein N-like isoform X2 [Populus euphratica]
13 Hb_000700_130 0.1787719414 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
14 Hb_007140_020 0.1789422943 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
15 Hb_002471_070 0.1824091512 - - Tartrate-resistant acid phosphatase type 5 precursor, putative [Ricinus communis]
16 Hb_002909_070 0.1824307566 - - hypothetical protein POPTR_0006s03000g [Populus trichocarpa]
17 Hb_000446_030 0.1859709529 - - amino acid binding protein, putative [Ricinus communis]
18 Hb_014720_080 0.1885417796 - - iron-sulfur cluster scaffold protein [Hevea brasiliensis]
19 Hb_174865_030 0.1888197886 - - PREDICTED: hemiasterlin resistant protein 1 [Eucalyptus grandis]
20 Hb_003207_110 0.1910519515 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A synthase hydroxymethylglutaryl coenzyme A synthase [Hevea brasiliensis]

Gene co-expression network

sample Hb_009493_010 Hb_009493_010 Hb_023536_010 Hb_023536_010 Hb_009493_010--Hb_023536_010 Hb_010897_030 Hb_010897_030 Hb_009493_010--Hb_010897_030 Hb_002909_060 Hb_002909_060 Hb_009493_010--Hb_002909_060 Hb_002600_100 Hb_002600_100 Hb_009493_010--Hb_002600_100 Hb_003893_090 Hb_003893_090 Hb_009493_010--Hb_003893_090 Hb_000635_140 Hb_000635_140 Hb_009493_010--Hb_000635_140 Hb_023536_010--Hb_010897_030 Hb_023536_010--Hb_003893_090 Hb_002798_060 Hb_002798_060 Hb_023536_010--Hb_002798_060 Hb_001329_210 Hb_001329_210 Hb_023536_010--Hb_001329_210 Hb_009486_190 Hb_009486_190 Hb_023536_010--Hb_009486_190 Hb_010897_030--Hb_000635_140 Hb_002603_060 Hb_002603_060 Hb_010897_030--Hb_002603_060 Hb_001123_210 Hb_001123_210 Hb_010897_030--Hb_001123_210 Hb_029904_040 Hb_029904_040 Hb_010897_030--Hb_029904_040 Hb_000896_120 Hb_000896_120 Hb_010897_030--Hb_000896_120 Hb_002759_230 Hb_002759_230 Hb_002909_060--Hb_002759_230 Hb_002027_400 Hb_002027_400 Hb_002909_060--Hb_002027_400 Hb_002540_030 Hb_002540_030 Hb_002909_060--Hb_002540_030 Hb_002053_060 Hb_002053_060 Hb_002909_060--Hb_002053_060 Hb_001912_010 Hb_001912_010 Hb_002909_060--Hb_001912_010 Hb_010172_070 Hb_010172_070 Hb_002909_060--Hb_010172_070 Hb_020419_010 Hb_020419_010 Hb_002600_100--Hb_020419_010 Hb_000487_310 Hb_000487_310 Hb_002600_100--Hb_000487_310 Hb_014720_080 Hb_014720_080 Hb_002600_100--Hb_014720_080 Hb_004738_010 Hb_004738_010 Hb_002600_100--Hb_004738_010 Hb_002600_100--Hb_002540_030 Hb_002119_120 Hb_002119_120 Hb_002600_100--Hb_002119_120 Hb_003893_090--Hb_014720_080 Hb_002909_070 Hb_002909_070 Hb_003893_090--Hb_002909_070 Hb_003893_090--Hb_002540_030 Hb_003125_150 Hb_003125_150 Hb_003893_090--Hb_003125_150 Hb_000815_260 Hb_000815_260 Hb_003893_090--Hb_000815_260 Hb_002182_060 Hb_002182_060 Hb_003893_090--Hb_002182_060 Hb_013839_010 Hb_013839_010 Hb_000635_140--Hb_013839_010 Hb_000635_140--Hb_023536_010 Hb_023732_060 Hb_023732_060 Hb_000635_140--Hb_023732_060 Hb_004994_260 Hb_004994_260 Hb_000635_140--Hb_004994_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5574 13.67 0.646443 10.7472 7.29905 5.22499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.4761 23.9113 19.3091 6.21639 1.7534

CAGE analysis