Hb_009503_030

Information

Type -
Description -
Location Contig9503: 61456-64002
Sequence    

Annotation

kegg
ID rcu:RCOM_0771690
description protein dimerization, putative
nr
ID XP_002530377.1
description protein dimerization, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SWK8
description Protein dimerization, putative OS=Ricinus communis GN=RCOM_0771690 PE=4 SV=1
Gene Ontology
ID GO:0003677
description hat transposon superfamily

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63404: 45020-61728 , PASA_asmbl_63406: 62257-64160
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009503_030 0.0 - - protein dimerization, putative [Ricinus communis]
2 Hb_000796_030 0.0568990905 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
3 Hb_003785_040 0.058653763 - - PREDICTED: R3H domain-containing protein 2-like isoform X1 [Jatropha curcas]
4 Hb_000574_440 0.0604967124 - - PREDICTED: uncharacterized protein LOC105634833 [Jatropha curcas]
5 Hb_006420_040 0.0611262254 transcription factor TF Family: Orphans PREDICTED: paired amphipathic helix protein Sin3-like 4 isoform X2 [Jatropha curcas]
6 Hb_009545_100 0.0639499733 - - PREDICTED: protein OBERON 1 [Jatropha curcas]
7 Hb_000502_050 0.0671552403 transcription factor TF Family: HSF Heat shock factor protein HSF8, putative [Ricinus communis]
8 Hb_000429_220 0.0681604489 transcription factor TF Family: MYB-related PREDICTED: uncharacterized protein LOC105640858 isoform X1 [Jatropha curcas]
9 Hb_002025_020 0.0685060342 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39710 [Jatropha curcas]
10 Hb_001550_060 0.0685948793 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
11 Hb_000035_290 0.0705693007 - - RNA recognition motif-containing family protein [Populus trichocarpa]
12 Hb_000003_290 0.0711212008 - - hypothetical protein JCGZ_24486 [Jatropha curcas]
13 Hb_001379_110 0.0727687994 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]
14 Hb_009175_020 0.07373614 - - PREDICTED: uncharacterized protein LOC101303140 [Fragaria vesca subsp. vesca]
15 Hb_000671_070 0.0740721399 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
16 Hb_000190_120 0.0743106817 - - PREDICTED: uncharacterized protein LOC105649936 [Jatropha curcas]
17 Hb_009851_070 0.074628045 - - PREDICTED: cyclin-dependent kinase E-1 [Jatropha curcas]
18 Hb_000958_140 0.0750630465 - - PREDICTED: uncharacterized protein LOC105628714 [Jatropha curcas]
19 Hb_003029_110 0.0753145985 - - PREDICTED: uncharacterized protein LOC105640062 isoform X1 [Jatropha curcas]
20 Hb_002823_030 0.075408875 - - -

Gene co-expression network

sample Hb_009503_030 Hb_009503_030 Hb_000796_030 Hb_000796_030 Hb_009503_030--Hb_000796_030 Hb_003785_040 Hb_003785_040 Hb_009503_030--Hb_003785_040 Hb_000574_440 Hb_000574_440 Hb_009503_030--Hb_000574_440 Hb_006420_040 Hb_006420_040 Hb_009503_030--Hb_006420_040 Hb_009545_100 Hb_009545_100 Hb_009503_030--Hb_009545_100 Hb_000502_050 Hb_000502_050 Hb_009503_030--Hb_000502_050 Hb_000780_230 Hb_000780_230 Hb_000796_030--Hb_000780_230 Hb_002025_020 Hb_002025_020 Hb_000796_030--Hb_002025_020 Hb_003029_110 Hb_003029_110 Hb_000796_030--Hb_003029_110 Hb_014267_010 Hb_014267_010 Hb_000796_030--Hb_014267_010 Hb_000796_030--Hb_009545_100 Hb_002615_090 Hb_002615_090 Hb_003785_040--Hb_002615_090 Hb_031527_020 Hb_031527_020 Hb_003785_040--Hb_031527_020 Hb_004128_050 Hb_004128_050 Hb_003785_040--Hb_004128_050 Hb_000395_130 Hb_000395_130 Hb_003785_040--Hb_000395_130 Hb_000092_020 Hb_000092_020 Hb_003785_040--Hb_000092_020 Hb_000084_250 Hb_000084_250 Hb_000574_440--Hb_000084_250 Hb_002221_050 Hb_002221_050 Hb_000574_440--Hb_002221_050 Hb_027380_140 Hb_027380_140 Hb_000574_440--Hb_027380_140 Hb_006831_110 Hb_006831_110 Hb_000574_440--Hb_006831_110 Hb_000768_070 Hb_000768_070 Hb_000574_440--Hb_000768_070 Hb_001550_060 Hb_001550_060 Hb_006420_040--Hb_001550_060 Hb_000441_120 Hb_000441_120 Hb_006420_040--Hb_000441_120 Hb_000671_070 Hb_000671_070 Hb_006420_040--Hb_000671_070 Hb_000025_320 Hb_000025_320 Hb_006420_040--Hb_000025_320 Hb_003206_130 Hb_003206_130 Hb_006420_040--Hb_003206_130 Hb_009545_100--Hb_002025_020 Hb_000343_120 Hb_000343_120 Hb_009545_100--Hb_000343_120 Hb_000347_070 Hb_000347_070 Hb_009545_100--Hb_000347_070 Hb_000116_500 Hb_000116_500 Hb_009545_100--Hb_000116_500 Hb_009545_100--Hb_003029_110 Hb_000225_040 Hb_000225_040 Hb_009545_100--Hb_000225_040 Hb_000502_050--Hb_003785_040 Hb_009411_010 Hb_009411_010 Hb_000502_050--Hb_009411_010 Hb_010222_050 Hb_010222_050 Hb_000502_050--Hb_010222_050 Hb_005993_050 Hb_005993_050 Hb_000502_050--Hb_005993_050 Hb_000502_050--Hb_000574_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.5786 17.1634 9.55749 9.88826 23.716 17.5146
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.43597 11.7207 14.6365 12.3664 15.2009

CAGE analysis