Hb_009510_020

Information

Type -
Description -
Location Contig9510: 22411-26507
Sequence    

Annotation

kegg
ID fve:101300515
description phosphatidylinositol transfer protein 1-like
nr
ID XP_012064883.1
description PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
swissprot
ID Q9NCL8
description Phosphatidylinositol transfer protein 1 OS=Dictyostelium discoideum GN=pitA PE=1 SV=1
trembl
ID A0A067L6R5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05584 PE=4 SV=1
Gene Ontology
ID GO:0005622
description phosphatidylinositol transfer protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63424: 23238-23674 , PASA_asmbl_63425: 22404-26559 , PASA_asmbl_63426: 24439-26510 , PASA_asmbl_63427: 24554-24897 , PASA_asmbl_63428: 23913-24044
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009510_020 0.0 - - PREDICTED: phosphatidylinositol transfer protein 2-like [Jatropha curcas]
2 Hb_001153_150 0.1143763479 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase HMG-CoA synthase 2 [Hevea brasiliensis]
3 Hb_000258_330 0.139872118 - - Ran GTPase binding protein, putative [Ricinus communis]
4 Hb_003582_040 0.1480670532 transcription factor TF Family: C2H2 hypothetical protein POPTR_0010s11160g [Populus trichocarpa]
5 Hb_014497_120 0.1481480377 rubber biosynthesis Gene Name: Hydroxymethylglutaryl coenzyme A reductase RecName: Full=3-hydroxy-3-methylglutaryl-coenzyme A reductase 1; Short=HMG-CoA reductase 1 [Hevea brasiliensis]
6 Hb_004883_030 0.1486016531 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80A2-like [Jatropha curcas]
7 Hb_001247_100 0.1507679315 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
8 Hb_000243_080 0.1511476118 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
9 Hb_001135_080 0.1561474101 - - PREDICTED: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2-like [Jatropha curcas]
10 Hb_005433_040 0.1599761141 - - PREDICTED: U-box domain-containing protein 11-like [Jatropha curcas]
11 Hb_001080_280 0.160651484 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
12 Hb_002732_030 0.1609945345 transcription factor TF Family: AP2 PREDICTED: ethylene-responsive transcription factor RAP2-7 isoform X1 [Jatropha curcas]
13 Hb_002234_070 0.1638905288 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase nol9 isoform X1 [Jatropha curcas]
14 Hb_000914_170 0.1642404293 - - hypothetical protein JCGZ_25909 [Jatropha curcas]
15 Hb_000362_190 0.1654970602 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
16 Hb_000317_490 0.1672653867 - - Gibberellin receptor GID1, putative [Ricinus communis]
17 Hb_000103_320 0.1721459534 - - Stem-specific protein TSJT1, putative [Ricinus communis]
18 Hb_000032_440 0.1723483742 - - protein with unknown function [Ricinus communis]
19 Hb_000987_070 0.1725003409 - - Inflorescence meristem receptor-like kinase 2 isoform 1 [Theobroma cacao]
20 Hb_004052_050 0.1731658279 - - PREDICTED: uncharacterized protein LOC105640640 [Jatropha curcas]

Gene co-expression network

sample Hb_009510_020 Hb_009510_020 Hb_001153_150 Hb_001153_150 Hb_009510_020--Hb_001153_150 Hb_000258_330 Hb_000258_330 Hb_009510_020--Hb_000258_330 Hb_003582_040 Hb_003582_040 Hb_009510_020--Hb_003582_040 Hb_014497_120 Hb_014497_120 Hb_009510_020--Hb_014497_120 Hb_004883_030 Hb_004883_030 Hb_009510_020--Hb_004883_030 Hb_001247_100 Hb_001247_100 Hb_009510_020--Hb_001247_100 Hb_002732_030 Hb_002732_030 Hb_001153_150--Hb_002732_030 Hb_001153_150--Hb_004883_030 Hb_000362_190 Hb_000362_190 Hb_001153_150--Hb_000362_190 Hb_033594_030 Hb_033594_030 Hb_001153_150--Hb_033594_030 Hb_000307_140 Hb_000307_140 Hb_001153_150--Hb_000307_140 Hb_004225_080 Hb_004225_080 Hb_000258_330--Hb_004225_080 Hb_000046_100 Hb_000046_100 Hb_000258_330--Hb_000046_100 Hb_000258_330--Hb_003582_040 Hb_001080_280 Hb_001080_280 Hb_000258_330--Hb_001080_280 Hb_001279_340 Hb_001279_340 Hb_000258_330--Hb_001279_340 Hb_010407_180 Hb_010407_180 Hb_003582_040--Hb_010407_180 Hb_000592_020 Hb_000592_020 Hb_003582_040--Hb_000592_020 Hb_000141_020 Hb_000141_020 Hb_003582_040--Hb_000141_020 Hb_000147_040 Hb_000147_040 Hb_003582_040--Hb_000147_040 Hb_005569_020 Hb_005569_020 Hb_003582_040--Hb_005569_020 Hb_014497_120--Hb_001153_150 Hb_000914_170 Hb_000914_170 Hb_014497_120--Hb_000914_170 Hb_000032_440 Hb_000032_440 Hb_014497_120--Hb_000032_440 Hb_014497_120--Hb_002732_030 Hb_014497_120--Hb_000258_330 Hb_000230_270 Hb_000230_270 Hb_004883_030--Hb_000230_270 Hb_000347_030 Hb_000347_030 Hb_004883_030--Hb_000347_030 Hb_000125_190 Hb_000125_190 Hb_004883_030--Hb_000125_190 Hb_004883_030--Hb_001247_100 Hb_000000_460 Hb_000000_460 Hb_004883_030--Hb_000000_460 Hb_000987_070 Hb_000987_070 Hb_001247_100--Hb_000987_070 Hb_003502_060 Hb_003502_060 Hb_001247_100--Hb_003502_060 Hb_004052_050 Hb_004052_050 Hb_001247_100--Hb_004052_050 Hb_000005_080 Hb_000005_080 Hb_001247_100--Hb_000005_080 Hb_021068_040 Hb_021068_040 Hb_001247_100--Hb_021068_040 Hb_030736_080 Hb_030736_080 Hb_001247_100--Hb_030736_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.5846 6.41049 7.71378 17.666 2.08573 6.11804
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
29.2099 12.7983 17.2984 5.06178 3.48339

CAGE analysis