Hb_009510_050

Information

Type -
Description -
Location Contig9510: 40462-43924
Sequence    

Annotation

kegg
ID rcu:RCOM_1398810
description hypothetical protein
nr
ID XP_002526335.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M1E7
description Tetraspanin-3 OS=Arabidopsis thaliana GN=TET3 PE=2 SV=1
trembl
ID B9SK16
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1398810 PE=4 SV=1
Gene Ontology
ID GO:0016021
description tetraspanin-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63432: 40567-43779
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009510_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003602_090 0.055724067 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
3 Hb_006615_180 0.0811795572 - - hypothetical protein B456_003G103400 [Gossypium raimondii]
4 Hb_082870_010 0.0986323073 - - Disease resistance protein RFL1, putative [Ricinus communis]
5 Hb_117127_010 0.1060357508 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH106 [Jatropha curcas]
6 Hb_000723_060 0.1060463343 - - PREDICTED: uncharacterized protein LOC105642243 [Jatropha curcas]
7 Hb_017604_020 0.1115063102 - - hypothetical protein JCGZ_22673 [Jatropha curcas]
8 Hb_000000_070 0.1140778313 - - allene oxide synthase [Hevea brasiliensis]
9 Hb_000098_250 0.1203873854 - - UDP-glucose flavonoid 3-O-glucosyltransferase [Medicago truncatula]
10 Hb_019040_010 0.122054097 - - PREDICTED: indole-3-acetic acid-induced protein ARG7 [Jatropha curcas]
11 Hb_003556_070 0.1231553109 - - metal ion binding protein, putative [Ricinus communis]
12 Hb_001699_050 0.1240832608 transcription factor TF Family: MYB hypothetical protein POPTR_0005s11410g [Populus trichocarpa]
13 Hb_002410_010 0.1266270743 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
14 Hb_002239_030 0.1284769694 transcription factor TF Family: ARF PREDICTED: auxin response factor 4 [Jatropha curcas]
15 Hb_013607_010 0.1311370437 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA3 [Jatropha curcas]
16 Hb_041145_010 0.1314656525 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]
17 Hb_005000_200 0.1317422032 - - PREDICTED: uncharacterized protein LOC105637887 [Jatropha curcas]
18 Hb_000101_140 0.131904644 - - amino acid transporter, putative [Ricinus communis]
19 Hb_022206_030 0.1363760146 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
20 Hb_002529_080 0.1365445474 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_009510_050 Hb_009510_050 Hb_003602_090 Hb_003602_090 Hb_009510_050--Hb_003602_090 Hb_006615_180 Hb_006615_180 Hb_009510_050--Hb_006615_180 Hb_082870_010 Hb_082870_010 Hb_009510_050--Hb_082870_010 Hb_117127_010 Hb_117127_010 Hb_009510_050--Hb_117127_010 Hb_000723_060 Hb_000723_060 Hb_009510_050--Hb_000723_060 Hb_017604_020 Hb_017604_020 Hb_009510_050--Hb_017604_020 Hb_003602_090--Hb_006615_180 Hb_003602_090--Hb_000723_060 Hb_003602_090--Hb_082870_010 Hb_003602_090--Hb_117127_010 Hb_019040_010 Hb_019040_010 Hb_003602_090--Hb_019040_010 Hb_006615_180--Hb_000723_060 Hb_000000_070 Hb_000000_070 Hb_006615_180--Hb_000000_070 Hb_000101_140 Hb_000101_140 Hb_006615_180--Hb_000101_140 Hb_006615_180--Hb_117127_010 Hb_082870_010--Hb_006615_180 Hb_082870_010--Hb_017604_020 Hb_082870_010--Hb_117127_010 Hb_000098_250 Hb_000098_250 Hb_082870_010--Hb_000098_250 Hb_117127_010--Hb_000098_250 Hb_008667_030 Hb_008667_030 Hb_117127_010--Hb_008667_030 Hb_002410_010 Hb_002410_010 Hb_117127_010--Hb_002410_010 Hb_002529_080 Hb_002529_080 Hb_117127_010--Hb_002529_080 Hb_117127_010--Hb_000000_070 Hb_000723_060--Hb_000101_140 Hb_002239_030 Hb_002239_030 Hb_000723_060--Hb_002239_030 Hb_000137_030 Hb_000137_030 Hb_000723_060--Hb_000137_030 Hb_000656_370 Hb_000656_370 Hb_000723_060--Hb_000656_370 Hb_001699_050 Hb_001699_050 Hb_017604_020--Hb_001699_050 Hb_002276_100 Hb_002276_100 Hb_017604_020--Hb_002276_100 Hb_000808_160 Hb_000808_160 Hb_017604_020--Hb_000808_160 Hb_003556_070 Hb_003556_070 Hb_017604_020--Hb_003556_070 Hb_004544_090 Hb_004544_090 Hb_017604_020--Hb_004544_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.17128 154.684 36.9398 64.566 0.88268 4.383
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.517706 0.135758 0.101668 41.6152 10.0157

CAGE analysis