Hb_009529_030

Information

Type -
Description -
Location Contig9529: 51489-54632
Sequence    

Annotation

kegg
ID rcu:RCOM_1315110
description hypothetical protein
nr
ID XP_012086582.1
description PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
swissprot
ID Q3TA38
description Transmembrane protein 120B OS=Mus musculus GN=Tmem120b PE=2 SV=1
trembl
ID B9RYZ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1315110 PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 120 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63441: 51232-70352 , PASA_asmbl_63442: 51232-70274 , PASA_asmbl_63443: 53060-70352 , PASA_asmbl_63444: 51219-52968
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009529_030 0.0 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
2 Hb_002273_120 0.0502109941 - - PREDICTED: probable apyrase 6 [Jatropha curcas]
3 Hb_017295_010 0.0644863132 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
4 Hb_000362_150 0.067172336 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
5 Hb_002785_050 0.0675078083 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
6 Hb_032050_040 0.0715061485 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
7 Hb_000345_360 0.0757542943 - - PREDICTED: protein AUXIN RESPONSE 4 [Jatropha curcas]
8 Hb_001882_050 0.0770437569 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
9 Hb_008103_040 0.0781283393 - - diacylglycerol O-acyltransferase 1 [Jatropha curcas]
10 Hb_000990_090 0.0783009281 - - PREDICTED: ER membrane protein complex subunit 1 [Jatropha curcas]
11 Hb_004659_020 0.0801369659 - - PREDICTED: coatomer subunit gamma-2 [Jatropha curcas]
12 Hb_007426_150 0.0812518228 - - PREDICTED: F-box protein At5g46170-like [Jatropha curcas]
13 Hb_003010_020 0.0843078267 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
14 Hb_017700_010 0.0868573369 - - PREDICTED: probable protein S-acyltransferase 15 [Jatropha curcas]
15 Hb_001018_130 0.0890983575 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
16 Hb_009049_020 0.0905681144 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase 1-like [Jatropha curcas]
17 Hb_002391_290 0.0918389801 - - PREDICTED: bifunctional nuclease 2 isoform X1 [Jatropha curcas]
18 Hb_001195_560 0.0919525933 - - PREDICTED: lysophospholipid acyltransferase LPEAT1 isoform X1 [Jatropha curcas]
19 Hb_004875_030 0.0930320443 - - PREDICTED: signal peptide peptidase-like 2 [Jatropha curcas]
20 Hb_007919_100 0.0931609594 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]

Gene co-expression network

sample Hb_009529_030 Hb_009529_030 Hb_002273_120 Hb_002273_120 Hb_009529_030--Hb_002273_120 Hb_017295_010 Hb_017295_010 Hb_009529_030--Hb_017295_010 Hb_000362_150 Hb_000362_150 Hb_009529_030--Hb_000362_150 Hb_002785_050 Hb_002785_050 Hb_009529_030--Hb_002785_050 Hb_032050_040 Hb_032050_040 Hb_009529_030--Hb_032050_040 Hb_000345_360 Hb_000345_360 Hb_009529_030--Hb_000345_360 Hb_002273_120--Hb_002785_050 Hb_003010_020 Hb_003010_020 Hb_002273_120--Hb_003010_020 Hb_002273_120--Hb_032050_040 Hb_003375_070 Hb_003375_070 Hb_002273_120--Hb_003375_070 Hb_002273_120--Hb_017295_010 Hb_000107_210 Hb_000107_210 Hb_017295_010--Hb_000107_210 Hb_005227_010 Hb_005227_010 Hb_017295_010--Hb_005227_010 Hb_000008_270 Hb_000008_270 Hb_017295_010--Hb_000008_270 Hb_001109_060 Hb_001109_060 Hb_017295_010--Hb_001109_060 Hb_001496_070 Hb_001496_070 Hb_000362_150--Hb_001496_070 Hb_152202_010 Hb_152202_010 Hb_000362_150--Hb_152202_010 Hb_000004_030 Hb_000004_030 Hb_000362_150--Hb_000004_030 Hb_000362_150--Hb_032050_040 Hb_002493_020 Hb_002493_020 Hb_000362_150--Hb_002493_020 Hb_002785_050--Hb_032050_040 Hb_000830_030 Hb_000830_030 Hb_002785_050--Hb_000830_030 Hb_001882_050 Hb_001882_050 Hb_002785_050--Hb_001882_050 Hb_000260_330 Hb_000260_330 Hb_002785_050--Hb_000260_330 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_032050_040--Hb_003010_020 Hb_032050_040--Hb_152202_010 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_004875_030 Hb_004875_030 Hb_000345_360--Hb_004875_030 Hb_000990_090 Hb_000990_090 Hb_000345_360--Hb_000990_090 Hb_004223_290 Hb_004223_290 Hb_000345_360--Hb_004223_290 Hb_002391_290 Hb_002391_290 Hb_000345_360--Hb_002391_290 Hb_041828_010 Hb_041828_010 Hb_000345_360--Hb_041828_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.0056 19.2611 19.9935 46.4175 48.1543 50.6182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.4317 17.9283 22.163 29.8963 31.7105

CAGE analysis