Hb_009529_040

Information

Type -
Description -
Location Contig9529: 68491-69970
Sequence    

Annotation

kegg
ID mdm:103424426
description transmembrane protein 120 homolog
nr
ID XP_008360730.1
description PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
swissprot
ID -
description -
trembl
ID A0A067GDT5
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0179612mg PE=4 SV=1
Gene Ontology
ID GO:0016021
description transmembrane protein 120 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63441: 51232-70352 , PASA_asmbl_63442: 51232-70274 , PASA_asmbl_63443: 53060-70352
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009529_040 0.0 - - PREDICTED: transmembrane protein 120 homolog isoform X1 [Malus domestica]
2 Hb_115107_010 0.0982277066 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
3 Hb_000032_070 0.1062220023 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
4 Hb_001018_110 0.1283594348 - - unnamed protein product [Coffea canephora]
5 Hb_002150_040 0.1293735291 - - PREDICTED: CMP-sialic acid transporter 1 isoform X3 [Jatropha curcas]
6 Hb_002611_020 0.13185872 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like [Populus euphratica]
7 Hb_187953_010 0.1333931481 - - PREDICTED: type II inositol 1,4,5-trisphosphate 5-phosphatase FRA3 isoform X2 [Jatropha curcas]
8 Hb_000784_070 0.1338762735 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
9 Hb_002400_330 0.1366560974 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X2 [Jatropha curcas]
10 Hb_007026_040 0.1379987334 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
11 Hb_000718_080 0.1390083549 - - hypothetical protein PRUPE_ppa005259mg [Prunus persica]
12 Hb_000107_080 0.1395146852 - - PREDICTED: uncharacterized protein LOC105641009 [Jatropha curcas]
13 Hb_012322_010 0.1400759643 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
14 Hb_008096_030 0.140645265 - - PREDICTED: uncharacterized protein LOC105638438 [Jatropha curcas]
15 Hb_099878_030 0.1410935617 - - PREDICTED: coiled-coil domain-containing protein R3HCC1L isoform X4 [Jatropha curcas]
16 Hb_002631_070 0.1427476273 - - PREDICTED: uncharacterized membrane protein At1g16860-like [Jatropha curcas]
17 Hb_000109_170 0.1430273207 - - PREDICTED: uncharacterized protein LOC105649868 isoform X1 [Jatropha curcas]
18 Hb_004466_060 0.1430403057 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
19 Hb_002110_040 0.1446208496 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
20 Hb_000140_280 0.1451815081 - - hypothetical protein B456_001G157900 [Gossypium raimondii]

Gene co-expression network

sample Hb_009529_040 Hb_009529_040 Hb_115107_010 Hb_115107_010 Hb_009529_040--Hb_115107_010 Hb_000032_070 Hb_000032_070 Hb_009529_040--Hb_000032_070 Hb_001018_110 Hb_001018_110 Hb_009529_040--Hb_001018_110 Hb_002150_040 Hb_002150_040 Hb_009529_040--Hb_002150_040 Hb_002611_020 Hb_002611_020 Hb_009529_040--Hb_002611_020 Hb_187953_010 Hb_187953_010 Hb_009529_040--Hb_187953_010 Hb_002110_040 Hb_002110_040 Hb_115107_010--Hb_002110_040 Hb_115477_010 Hb_115477_010 Hb_115107_010--Hb_115477_010 Hb_007026_040 Hb_007026_040 Hb_115107_010--Hb_007026_040 Hb_001135_140 Hb_001135_140 Hb_115107_010--Hb_001135_140 Hb_168973_010 Hb_168973_010 Hb_115107_010--Hb_168973_010 Hb_002603_050 Hb_002603_050 Hb_000032_070--Hb_002603_050 Hb_000032_070--Hb_001018_110 Hb_000032_070--Hb_002150_040 Hb_003141_070 Hb_003141_070 Hb_000032_070--Hb_003141_070 Hb_002631_070 Hb_002631_070 Hb_000032_070--Hb_002631_070 Hb_000300_630 Hb_000300_630 Hb_001018_110--Hb_000300_630 Hb_005023_010 Hb_005023_010 Hb_001018_110--Hb_005023_010 Hb_001018_130 Hb_001018_130 Hb_001018_110--Hb_001018_130 Hb_044736_010 Hb_044736_010 Hb_001018_110--Hb_044736_010 Hb_003994_280 Hb_003994_280 Hb_001018_110--Hb_003994_280 Hb_072922_010 Hb_072922_010 Hb_001018_110--Hb_072922_010 Hb_000159_090 Hb_000159_090 Hb_002150_040--Hb_000159_090 Hb_000140_280 Hb_000140_280 Hb_002150_040--Hb_000140_280 Hb_005218_020 Hb_005218_020 Hb_002150_040--Hb_005218_020 Hb_000069_210 Hb_000069_210 Hb_002150_040--Hb_000069_210 Hb_086085_020 Hb_086085_020 Hb_002150_040--Hb_086085_020 Hb_000136_100 Hb_000136_100 Hb_002150_040--Hb_000136_100 Hb_000230_180 Hb_000230_180 Hb_002611_020--Hb_000230_180 Hb_181328_010 Hb_181328_010 Hb_002611_020--Hb_181328_010 Hb_002400_330 Hb_002400_330 Hb_002611_020--Hb_002400_330 Hb_002122_010 Hb_002122_010 Hb_002611_020--Hb_002122_010 Hb_005170_010 Hb_005170_010 Hb_002611_020--Hb_005170_010 Hb_000696_010 Hb_000696_010 Hb_002611_020--Hb_000696_010 Hb_012322_010 Hb_012322_010 Hb_187953_010--Hb_012322_010 Hb_000140_210 Hb_000140_210 Hb_187953_010--Hb_000140_210 Hb_000718_080 Hb_000718_080 Hb_187953_010--Hb_000718_080 Hb_085781_020 Hb_085781_020 Hb_187953_010--Hb_085781_020 Hb_000236_310 Hb_000236_310 Hb_187953_010--Hb_000236_310 Hb_001195_470 Hb_001195_470 Hb_187953_010--Hb_001195_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.647 6.03931 5.79208 43.7381 15.9224 39.4703
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.5937 8.49501 18.4732 20.3615 18.004

CAGE analysis