Hb_009535_030

Information

Type -
Description -
Location Contig9535: 39850-42097
Sequence    

Annotation

kegg
ID rcu:RCOM_1449120
description cysteine protease, putative (EC:3.4.22.16)
nr
ID AIB06024.1
description CP2 [Hevea brasiliensis]
swissprot
ID P43296
description Cysteine proteinase RD19a OS=Arabidopsis thaliana GN=RD19A PE=2 SV=1
trembl
ID A0A060D9J0
description CP2 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0008234
description cysteine proteinase rd19a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63479: 39798-42079
cDNA
(Sanger)
(ID:Location)		 017_O19.ab1: 41614-42079 , 023_D22.ab1: 41621-42073

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009535_030 0.0 - - CP2 [Hevea brasiliensis]
2 Hb_029584_100 0.0851590989 - - Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase [Gossypium arboreum]
3 Hb_004030_060 0.0879752368 - - receptor protein kinase zmpk1, putative [Ricinus communis]
4 Hb_001235_130 0.0913503577 - - -
5 Hb_001247_270 0.1019436045 - - PREDICTED: probable L-cysteine desulfhydrase, chloroplastic [Jatropha curcas]
6 Hb_007229_050 0.1019602654 - - PREDICTED: palmitoyl-protein thioesterase 1 isoform X1 [Jatropha curcas]
7 Hb_001473_170 0.1045801454 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
8 Hb_098533_010 0.1115885564 - - hypothetical protein L484_003492 [Morus notabilis]
9 Hb_000683_050 0.1124229859 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
10 Hb_007317_020 0.1138233826 - - PREDICTED: transmembrane 9 superfamily member 5 isoform X1 [Jatropha curcas]
11 Hb_001105_130 0.114576802 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
12 Hb_000494_030 0.1147490289 - - PREDICTED: uncharacterized protein LOC105643196 [Jatropha curcas]
13 Hb_010390_010 0.1176767815 - - casein kinase, putative [Ricinus communis]
14 Hb_000019_170 0.1183777978 - - PREDICTED: alpha-mannosidase [Jatropha curcas]
15 Hb_003371_190 0.1189456107 - - PREDICTED: beta-glucosidase 13-like [Jatropha curcas]
16 Hb_002170_020 0.1194536282 transcription factor TF Family: MYB MYB transcription factor [Hevea brasiliensis]
17 Hb_003006_080 0.1206894796 - - PREDICTED: heparan-alpha-glucosaminide N-acetyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_000157_140 0.1219283264 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
19 Hb_000337_010 0.1221637226 - - PREDICTED: proteasome activator subunit 4 isoform X2 [Jatropha curcas]
20 Hb_000590_070 0.1226855616 - - PREDICTED: beta-hexosaminidase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_009535_030 Hb_009535_030 Hb_029584_100 Hb_029584_100 Hb_009535_030--Hb_029584_100 Hb_004030_060 Hb_004030_060 Hb_009535_030--Hb_004030_060 Hb_001235_130 Hb_001235_130 Hb_009535_030--Hb_001235_130 Hb_001247_270 Hb_001247_270 Hb_009535_030--Hb_001247_270 Hb_007229_050 Hb_007229_050 Hb_009535_030--Hb_007229_050 Hb_001473_170 Hb_001473_170 Hb_009535_030--Hb_001473_170 Hb_029584_100--Hb_001247_270 Hb_029584_100--Hb_007229_050 Hb_019654_110 Hb_019654_110 Hb_029584_100--Hb_019654_110 Hb_029584_100--Hb_001235_130 Hb_098533_010 Hb_098533_010 Hb_029584_100--Hb_098533_010 Hb_000157_140 Hb_000157_140 Hb_004030_060--Hb_000157_140 Hb_000683_050 Hb_000683_050 Hb_004030_060--Hb_000683_050 Hb_000494_030 Hb_000494_030 Hb_004030_060--Hb_000494_030 Hb_010390_010 Hb_010390_010 Hb_004030_060--Hb_010390_010 Hb_005854_040 Hb_005854_040 Hb_004030_060--Hb_005854_040 Hb_011174_080 Hb_011174_080 Hb_001235_130--Hb_011174_080 Hb_000256_160 Hb_000256_160 Hb_001235_130--Hb_000256_160 Hb_001235_130--Hb_007229_050 Hb_001235_130--Hb_005854_040 Hb_005588_120 Hb_005588_120 Hb_001235_130--Hb_005588_120 Hb_000959_120 Hb_000959_120 Hb_001247_270--Hb_000959_120 Hb_003006_080 Hb_003006_080 Hb_001247_270--Hb_003006_080 Hb_004522_030 Hb_004522_030 Hb_001247_270--Hb_004522_030 Hb_073808_010 Hb_073808_010 Hb_001247_270--Hb_073808_010 Hb_006185_030 Hb_006185_030 Hb_007229_050--Hb_006185_030 Hb_004129_010 Hb_004129_010 Hb_007229_050--Hb_004129_010 Hb_007229_050--Hb_098533_010 Hb_007229_050--Hb_000157_140 Hb_007229_050--Hb_000256_160 Hb_002311_130 Hb_002311_130 Hb_001473_170--Hb_002311_130 Hb_001473_170--Hb_010390_010 Hb_000258_050 Hb_000258_050 Hb_001473_170--Hb_000258_050 Hb_001473_170--Hb_000494_030 Hb_001473_170--Hb_004030_060 Hb_007313_040 Hb_007313_040 Hb_001473_170--Hb_007313_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
36.088 203.145 137.598 402.743 39.7408 45.2328
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
51.7321 41.8272 78.9883 360.138 310.912

CAGE analysis