Hb_009543_020

Information

Type -
Description -
Location Contig9543: 3834-4881
Sequence    

Annotation

kegg
ID cic:CICLE_v10001943mg
description hypothetical protein
nr
ID XP_012085010.1
description PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
swissprot
ID Q6P7K0
description Carboxymethylenebutenolidase homolog OS=Xenopus tropicalis GN=cmbl PE=2 SV=1
trembl
ID A0A067K582
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22194 PE=4 SV=1
Gene Ontology
ID GO:0016787
description carboxymethylenebutenolidase homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63487: 4715-5076
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009543_020 0.0 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
2 Hb_002903_080 0.1101686258 - - PREDICTED: splicing factor 3B subunit 2 [Jatropha curcas]
3 Hb_000170_190 0.1144316048 - - PREDICTED: uncharacterized protein LOC105638988 [Jatropha curcas]
4 Hb_081879_030 0.1160033484 - - PREDICTED: U3 small nucleolar RNA-associated protein 21 homolog [Jatropha curcas]
5 Hb_000523_090 0.1179959486 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
6 Hb_002601_130 0.1208462119 - - plastid ATP/ADP transport protein 2 [Manihot esculenta]
7 Hb_000342_080 0.1216657326 - - hypothetical protein L484_019524 [Morus notabilis]
8 Hb_002301_260 0.1257908242 - - hypothetical protein MIMGU_mgv1a0031591mg, partial [Erythranthe guttata]
9 Hb_000436_040 0.1299061347 - - PREDICTED: transportin-1 [Jatropha curcas]
10 Hb_006663_070 0.1300108912 - - PREDICTED: uncharacterized protein LOC105637432 [Jatropha curcas]
11 Hb_000743_050 0.1314696647 - - unnamed protein product [Vitis vinifera]
12 Hb_000671_110 0.1327556397 - - hypothetical protein JCGZ_23794 [Jatropha curcas]
13 Hb_000300_580 0.1328871528 - - PREDICTED: importin-5-like [Jatropha curcas]
14 Hb_002276_060 0.1335733162 - - hypothetical protein CISIN_1g002019mg [Citrus sinensis]
15 Hb_000951_110 0.1337209056 - - heat shock protein, putative [Ricinus communis]
16 Hb_002551_070 0.1338166592 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
17 Hb_007904_220 0.1347281385 - - PREDICTED: protein SDA1 homolog isoform X1 [Jatropha curcas]
18 Hb_007380_090 0.135621524 - - -
19 Hb_003711_040 0.1358701856 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
20 Hb_003623_030 0.1375231697 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]

Gene co-expression network

sample Hb_009543_020 Hb_009543_020 Hb_002903_080 Hb_002903_080 Hb_009543_020--Hb_002903_080 Hb_000170_190 Hb_000170_190 Hb_009543_020--Hb_000170_190 Hb_081879_030 Hb_081879_030 Hb_009543_020--Hb_081879_030 Hb_000523_090 Hb_000523_090 Hb_009543_020--Hb_000523_090 Hb_002601_130 Hb_002601_130 Hb_009543_020--Hb_002601_130 Hb_000342_080 Hb_000342_080 Hb_009543_020--Hb_000342_080 Hb_000436_040 Hb_000436_040 Hb_002903_080--Hb_000436_040 Hb_004096_100 Hb_004096_100 Hb_002903_080--Hb_004096_100 Hb_002903_080--Hb_081879_030 Hb_003464_020 Hb_003464_020 Hb_002903_080--Hb_003464_020 Hb_010931_040 Hb_010931_040 Hb_002903_080--Hb_010931_040 Hb_000347_130 Hb_000347_130 Hb_002903_080--Hb_000347_130 Hb_000170_190--Hb_002601_130 Hb_002276_060 Hb_002276_060 Hb_000170_190--Hb_002276_060 Hb_000300_580 Hb_000300_580 Hb_000170_190--Hb_000300_580 Hb_000010_180 Hb_000010_180 Hb_000170_190--Hb_000010_180 Hb_008489_020 Hb_008489_020 Hb_000170_190--Hb_008489_020 Hb_000768_190 Hb_000768_190 Hb_000170_190--Hb_000768_190 Hb_081879_030--Hb_000347_130 Hb_081879_030--Hb_000436_040 Hb_000743_050 Hb_000743_050 Hb_081879_030--Hb_000743_050 Hb_025012_010 Hb_025012_010 Hb_081879_030--Hb_025012_010 Hb_042487_010 Hb_042487_010 Hb_081879_030--Hb_042487_010 Hb_002067_020 Hb_002067_020 Hb_000523_090--Hb_002067_020 Hb_000364_080 Hb_000364_080 Hb_000523_090--Hb_000364_080 Hb_002174_060 Hb_002174_060 Hb_000523_090--Hb_002174_060 Hb_010423_020 Hb_010423_020 Hb_000523_090--Hb_010423_020 Hb_000364_060 Hb_000364_060 Hb_000523_090--Hb_000364_060 Hb_004195_280 Hb_004195_280 Hb_000523_090--Hb_004195_280 Hb_006663_070 Hb_006663_070 Hb_002601_130--Hb_006663_070 Hb_002601_130--Hb_002276_060 Hb_002551_070 Hb_002551_070 Hb_002601_130--Hb_002551_070 Hb_002601_130--Hb_008489_020 Hb_009535_020 Hb_009535_020 Hb_002601_130--Hb_009535_020 Hb_000342_080--Hb_002903_080 Hb_001546_050 Hb_001546_050 Hb_000342_080--Hb_001546_050 Hb_007380_090 Hb_007380_090 Hb_000342_080--Hb_007380_090 Hb_000342_080--Hb_000364_060 Hb_000071_180 Hb_000071_180 Hb_000342_080--Hb_000071_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.1096 12.9488 6.92296 9.18894 36.1541 69.909
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.411 16.5216 9.56509 17.5588 23.1916

CAGE analysis