Hb_009543_030

Information

Type -
Description -
Location Contig9543: 20211-22621
Sequence    

Annotation

kegg
ID rcu:RCOM_1237470
description Prefoldin subunit, putative
nr
ID NP_001295708.1
description prefoldin subunit 1 [Jatropha curcas]
swissprot
ID O60925
description Prefoldin subunit 1 OS=Homo sapiens GN=PFDN1 PE=1 SV=2
trembl
ID D6BR52
description Prefoldin-related KE2-like protein OS=Jatropha curcas PE=2 SV=1
Gene Ontology
ID GO:0005829
description prefoldin subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63488: 20142-22532 , PASA_asmbl_63489: 20286-22338 , PASA_asmbl_63490: 21818-22022
cDNA
(Sanger)
(ID:Location)		 011_M23.ab1: 20279-22329 , 016_I07.ab1: 20285-22329 , 043_J10.ab1: 20235-22306

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009543_030 0.0 - - prefoldin subunit 1 [Jatropha curcas]
2 Hb_000103_140 0.0839165166 - - ribosomal protein S3a [Populus trichocarpa]
3 Hb_000175_070 0.0916352742 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
4 Hb_000510_090 0.0983936657 - - 40S ribosomal protein S15 [Morus notabilis]
5 Hb_007193_100 0.0999780802 - - syntaxin family protein [Populus trichocarpa]
6 Hb_004453_150 0.1005120256 - - BnaC02g13240D [Brassica napus]
7 Hb_000684_230 0.1014909643 - - 40S ribosomal protein S23, putative [Ricinus communis]
8 Hb_000380_010 0.1020867203 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
9 Hb_002272_260 0.1021560157 - - -
10 Hb_029510_140 0.1027846304 - - PREDICTED: uncharacterized protein LOC105635017 [Jatropha curcas]
11 Hb_000101_090 0.1105563936 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
12 Hb_012305_050 0.1116669955 - - unnamed protein product [Coffea canephora]
13 Hb_000045_070 0.1126482715 - - conserved hypothetical protein [Ricinus communis]
14 Hb_009558_020 0.112703051 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
15 Hb_022250_130 0.1128584726 - - inositol hexaphosphate kinase, putative [Ricinus communis]
16 Hb_004724_100 0.1135978894 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
17 Hb_007012_020 0.1167337071 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
18 Hb_000364_150 0.1168413651 - - -
19 Hb_002217_310 0.1182084868 - - PREDICTED: ER membrane protein complex subunit 6 [Jatropha curcas]
20 Hb_141131_010 0.1182205917 - - Diphthamide biosynthesis protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_009543_030 Hb_009543_030 Hb_000103_140 Hb_000103_140 Hb_009543_030--Hb_000103_140 Hb_000175_070 Hb_000175_070 Hb_009543_030--Hb_000175_070 Hb_000510_090 Hb_000510_090 Hb_009543_030--Hb_000510_090 Hb_007193_100 Hb_007193_100 Hb_009543_030--Hb_007193_100 Hb_004453_150 Hb_004453_150 Hb_009543_030--Hb_004453_150 Hb_000684_230 Hb_000684_230 Hb_009543_030--Hb_000684_230 Hb_000103_140--Hb_000175_070 Hb_000103_140--Hb_007193_100 Hb_063134_010 Hb_063134_010 Hb_000103_140--Hb_063134_010 Hb_008173_120 Hb_008173_120 Hb_000103_140--Hb_008173_120 Hb_029510_140 Hb_029510_140 Hb_000103_140--Hb_029510_140 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_000175_070--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_009558_020 Hb_009558_020 Hb_000175_070--Hb_009558_020 Hb_143813_010 Hb_143813_010 Hb_000510_090--Hb_143813_010 Hb_004724_100 Hb_004724_100 Hb_000510_090--Hb_004724_100 Hb_034585_030 Hb_034585_030 Hb_000510_090--Hb_034585_030 Hb_155375_010 Hb_155375_010 Hb_000510_090--Hb_155375_010 Hb_003777_270 Hb_003777_270 Hb_000510_090--Hb_003777_270 Hb_141131_010 Hb_141131_010 Hb_000510_090--Hb_141131_010 Hb_007193_100--Hb_063134_010 Hb_007193_100--Hb_000317_430 Hb_007193_100--Hb_029510_140 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_025193_050 Hb_025193_050 Hb_004453_150--Hb_025193_050 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_004453_150--Hb_000175_070 Hb_000684_230--Hb_008173_120 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_000003_730 Hb_000003_730 Hb_000684_230--Hb_000003_730 Hb_007317_060 Hb_007317_060 Hb_000684_230--Hb_007317_060 Hb_000684_230--Hb_000103_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
152.947 21.2246 40.4962 101.965 160.672 411.674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
193.747 222.462 130.373 114.014 30.2143

CAGE analysis