Hb_009545_010

Information

Type transcription factor
Description TF Family: GNAT
Location Contig9545: 2354-7462
Sequence    

Annotation

kegg
ID mtr:MTR_7g024760
description Acetyltransferase
nr
ID XP_003621899.1
description Acetyltransferase [Medicago truncatula]
swissprot
ID O34569
description Uncharacterized N-acetyltransferase YoaA OS=Bacillus subtilis (strain 168) GN=yoaA PE=3 SV=2
trembl
ID F6HTV8
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0030g01410 PE=4 SV=1
Gene Ontology
ID GO:0008080
description gcn5-related n-acetyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63492: 4795-5208
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009545_010 0.0 transcription factor TF Family: GNAT Acetyltransferase [Medicago truncatula]
2 Hb_000152_810 0.1388021713 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 [Jatropha curcas]
3 Hb_001504_220 0.1555177847 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_002182_050 0.1690825838 - - hypothetical protein CICLE_v10022654mg [Citrus clementina]
5 Hb_050203_010 0.184001569 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
6 Hb_001004_100 0.1883511351 - - ATP binding protein, putative [Ricinus communis]
7 Hb_000984_080 0.1893618743 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]
8 Hb_116478_010 0.1905499314 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF003-like [Jatropha curcas]
9 Hb_000032_560 0.1913993706 - - hypothetical protein JCGZ_15037 [Jatropha curcas]
10 Hb_004855_050 0.1917605149 - - hypothetical protein POPTR_0016s12140g [Populus trichocarpa]
11 Hb_032631_050 0.1920404961 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]
12 Hb_159015_010 0.1927712132 - - receptor protein kinase, putative [Ricinus communis]
13 Hb_012553_020 0.1945605625 - - hypothetical protein JCGZ_09282 [Jatropha curcas]
14 Hb_000753_250 0.1950930671 - - PREDICTED: uncharacterized protein LOC105640661 [Jatropha curcas]
15 Hb_000005_230 0.1952853521 - - hypothetical protein POPTR_0009s01160g [Populus trichocarpa]
16 Hb_158092_060 0.1959069471 - - aspartate semialdehyde dehydrogenase, putative [Ricinus communis]
17 Hb_008768_010 0.1961343372 - - PREDICTED: equilibrative nucleotide transporter 8 isoform X1 [Jatropha curcas]
18 Hb_000300_590 0.1966477593 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
19 Hb_000934_170 0.1978416354 - - alcohol dehydrogenase, putative [Ricinus communis]
20 Hb_018133_110 0.1988111943 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_009545_010 Hb_009545_010 Hb_000152_810 Hb_000152_810 Hb_009545_010--Hb_000152_810 Hb_001504_220 Hb_001504_220 Hb_009545_010--Hb_001504_220 Hb_002182_050 Hb_002182_050 Hb_009545_010--Hb_002182_050 Hb_050203_010 Hb_050203_010 Hb_009545_010--Hb_050203_010 Hb_001004_100 Hb_001004_100 Hb_009545_010--Hb_001004_100 Hb_000984_080 Hb_000984_080 Hb_009545_010--Hb_000984_080 Hb_000152_810--Hb_001504_220 Hb_055305_010 Hb_055305_010 Hb_000152_810--Hb_055305_010 Hb_004855_050 Hb_004855_050 Hb_000152_810--Hb_004855_050 Hb_142332_010 Hb_142332_010 Hb_000152_810--Hb_142332_010 Hb_032631_050 Hb_032631_050 Hb_000152_810--Hb_032631_050 Hb_012553_020 Hb_012553_020 Hb_001504_220--Hb_012553_020 Hb_014037_010 Hb_014037_010 Hb_001504_220--Hb_014037_010 Hb_011200_020 Hb_011200_020 Hb_001504_220--Hb_011200_020 Hb_003399_030 Hb_003399_030 Hb_001504_220--Hb_003399_030 Hb_011063_060 Hb_011063_060 Hb_001504_220--Hb_011063_060 Hb_000487_240 Hb_000487_240 Hb_002182_050--Hb_000487_240 Hb_159015_010 Hb_159015_010 Hb_002182_050--Hb_159015_010 Hb_018133_110 Hb_018133_110 Hb_002182_050--Hb_018133_110 Hb_000032_560 Hb_000032_560 Hb_002182_050--Hb_000032_560 Hb_005064_040 Hb_005064_040 Hb_002182_050--Hb_005064_040 Hb_116478_010 Hb_116478_010 Hb_002182_050--Hb_116478_010 Hb_050203_010--Hb_002182_050 Hb_006618_080 Hb_006618_080 Hb_050203_010--Hb_006618_080 Hb_002870_010 Hb_002870_010 Hb_050203_010--Hb_002870_010 Hb_001377_010 Hb_001377_010 Hb_050203_010--Hb_001377_010 Hb_000911_050 Hb_000911_050 Hb_050203_010--Hb_000911_050 Hb_001104_210 Hb_001104_210 Hb_050203_010--Hb_001104_210 Hb_001123_010 Hb_001123_010 Hb_001004_100--Hb_001123_010 Hb_012753_190 Hb_012753_190 Hb_001004_100--Hb_012753_190 Hb_158092_060 Hb_158092_060 Hb_001004_100--Hb_158092_060 Hb_029904_010 Hb_029904_010 Hb_001004_100--Hb_029904_010 Hb_002849_150 Hb_002849_150 Hb_001004_100--Hb_002849_150 Hb_000653_010 Hb_000653_010 Hb_001004_100--Hb_000653_010 Hb_076895_020 Hb_076895_020 Hb_000984_080--Hb_076895_020 Hb_000140_260 Hb_000140_260 Hb_000984_080--Hb_000140_260 Hb_000539_080 Hb_000539_080 Hb_000984_080--Hb_000539_080 Hb_002110_270 Hb_002110_270 Hb_000984_080--Hb_002110_270 Hb_000758_030 Hb_000758_030 Hb_000984_080--Hb_000758_030 Hb_006006_070 Hb_006006_070 Hb_000984_080--Hb_006006_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.915061 0.194507 1.3912 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0869471 0.364832 0.257659 5.58361 0.382624

CAGE analysis