Hb_009545_030

Information

Type -
Description -
Location Contig9545: 22014-26872
Sequence    

Annotation

kegg
ID pop:POPTR_0010s09590g
description POPTRDRAFT_880835; integral membrane transporter family protein
nr
ID XP_012069656.1
description PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
swissprot
ID Q9SKZ5
description Folate-biopterin transporter 1, chloroplastic OS=Arabidopsis thaliana GN=At2g32040 PE=1 SV=2
trembl
ID A0A067KZ13
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02191 PE=4 SV=1
Gene Ontology
ID GO:0016021
description folate-biopterin transporter chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63495: 21938-22645 , PASA_asmbl_63496: 24512-25047
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009545_030 0.0 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
2 Hb_007416_290 0.1178167035 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
3 Hb_008143_040 0.1203433156 - - Alpha-expansin 4 precursor, putative [Ricinus communis]
4 Hb_001159_170 0.1360022912 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
5 Hb_004324_030 0.1365779702 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
6 Hb_007134_030 0.1378688164 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
7 Hb_007138_030 0.1394476896 - - PREDICTED: putative disease resistance protein At4g11170 [Jatropha curcas]
8 Hb_000970_020 0.1549025401 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
9 Hb_000165_200 0.1571212714 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
10 Hb_158092_040 0.1577224357 - - PREDICTED: uncharacterized protein LOC105647294 [Jatropha curcas]
11 Hb_007590_100 0.1629206171 - - PREDICTED: phosphoinositide phospholipase C 4-like [Jatropha curcas]
12 Hb_042509_020 0.1637779399 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
13 Hb_022250_160 0.1668449675 - - respiratory burst oxidase A [Manihot esculenta]
14 Hb_008566_080 0.1679381663 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
15 Hb_000186_290 0.1695313056 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 8 isoform X1 [Jatropha curcas]
16 Hb_080477_080 0.1716879735 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 isoform X1 [Gossypium raimondii]
17 Hb_000216_050 0.1737470806 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
18 Hb_005784_060 0.1750092552 - - PREDICTED: U-box domain-containing protein 28 [Jatropha curcas]
19 Hb_002739_040 0.1767889413 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
20 Hb_003030_010 0.1793024406 - - PREDICTED: random slug protein 5-like [Jatropha curcas]

Gene co-expression network

sample Hb_009545_030 Hb_009545_030 Hb_007416_290 Hb_007416_290 Hb_009545_030--Hb_007416_290 Hb_008143_040 Hb_008143_040 Hb_009545_030--Hb_008143_040 Hb_001159_170 Hb_001159_170 Hb_009545_030--Hb_001159_170 Hb_004324_030 Hb_004324_030 Hb_009545_030--Hb_004324_030 Hb_007134_030 Hb_007134_030 Hb_009545_030--Hb_007134_030 Hb_007138_030 Hb_007138_030 Hb_009545_030--Hb_007138_030 Hb_022250_160 Hb_022250_160 Hb_007416_290--Hb_022250_160 Hb_007416_290--Hb_008143_040 Hb_007416_290--Hb_007134_030 Hb_004079_100 Hb_004079_100 Hb_007416_290--Hb_004079_100 Hb_000946_070 Hb_000946_070 Hb_007416_290--Hb_000946_070 Hb_008143_040--Hb_007134_030 Hb_117639_010 Hb_117639_010 Hb_008143_040--Hb_117639_010 Hb_000057_100 Hb_000057_100 Hb_008143_040--Hb_000057_100 Hb_000115_250 Hb_000115_250 Hb_008143_040--Hb_000115_250 Hb_000970_020 Hb_000970_020 Hb_001159_170--Hb_000970_020 Hb_001159_170--Hb_004324_030 Hb_001159_170--Hb_007416_290 Hb_000959_120 Hb_000959_120 Hb_001159_170--Hb_000959_120 Hb_001159_170--Hb_007134_030 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_042509_020 Hb_042509_020 Hb_004324_030--Hb_042509_020 Hb_026549_050 Hb_026549_050 Hb_004324_030--Hb_026549_050 Hb_000003_020 Hb_000003_020 Hb_004324_030--Hb_000003_020 Hb_000181_210 Hb_000181_210 Hb_004324_030--Hb_000181_210 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_187959_010 Hb_187959_010 Hb_007134_030--Hb_187959_010 Hb_004032_110 Hb_004032_110 Hb_007134_030--Hb_004032_110 Hb_001439_010 Hb_001439_010 Hb_007134_030--Hb_001439_010 Hb_005784_060 Hb_005784_060 Hb_007138_030--Hb_005784_060 Hb_080477_080 Hb_080477_080 Hb_007138_030--Hb_080477_080 Hb_000749_160 Hb_000749_160 Hb_007138_030--Hb_000749_160 Hb_158092_040 Hb_158092_040 Hb_007138_030--Hb_158092_040 Hb_179960_010 Hb_179960_010 Hb_007138_030--Hb_179960_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.170235 0.271036 1.06244 0.00992231 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0675552 0.0885907 0.067202 0.796528 0.449365

CAGE analysis