Hb_009545_080

Information

Type -
Description -
Location Contig9545: 52289-57142
Sequence    

Annotation

kegg
ID pop:POPTR_0008s15400g
description POPTRDRAFT_564854; hypothetical protein
nr
ID XP_002312536.1
description hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9HJZ2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s15400g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63503: 52231-56725 , PASA_asmbl_63504: 54048-54285 , PASA_asmbl_63505: 52321-57009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009545_080 0.0 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
2 Hb_000883_020 0.0481334623 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
3 Hb_002997_080 0.0601529595 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
4 Hb_000230_560 0.0601534455 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
5 Hb_004109_280 0.0618149566 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
6 Hb_000212_330 0.0659381507 - - PREDICTED: biotin carboxyl carrier protein of acetyl-CoA carboxylase 1, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_032986_010 0.0668111741 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
8 Hb_000575_040 0.0701315615 - - PREDICTED: serine/arginine-rich splicing factor SC35 [Jatropha curcas]
9 Hb_008511_130 0.0716579164 - - PREDICTED: probable phenylalanine--tRNA ligase alpha subunit [Jatropha curcas]
10 Hb_000390_180 0.073459693 - - PREDICTED: uncharacterized protein LOC101291673 [Fragaria vesca subsp. vesca]
11 Hb_001012_010 0.0749741884 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
12 Hb_001357_350 0.0753937675 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000260_100 0.0758098965 - - conserved hypothetical protein [Ricinus communis]
14 Hb_030736_100 0.0760973354 - - conserved hypothetical protein [Ricinus communis]
15 Hb_003939_050 0.0762171204 - - protein with unknown function [Ricinus communis]
16 Hb_065500_060 0.0763176395 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
17 Hb_000141_250 0.0765911117 - - PREDICTED: oxysterol-binding protein-related protein 2A isoform X3 [Jatropha curcas]
18 Hb_054865_120 0.0769218122 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 9 [Jatropha curcas]
19 Hb_003125_160 0.0771821505 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-1 isoform X1 [Jatropha curcas]
20 Hb_063716_100 0.0773251721 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_009545_080 Hb_009545_080 Hb_000883_020 Hb_000883_020 Hb_009545_080--Hb_000883_020 Hb_002997_080 Hb_002997_080 Hb_009545_080--Hb_002997_080 Hb_000230_560 Hb_000230_560 Hb_009545_080--Hb_000230_560 Hb_004109_280 Hb_004109_280 Hb_009545_080--Hb_004109_280 Hb_000212_330 Hb_000212_330 Hb_009545_080--Hb_000212_330 Hb_032986_010 Hb_032986_010 Hb_009545_080--Hb_032986_010 Hb_000883_020--Hb_002997_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000883_020--Hb_000230_560 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350 Hb_002997_080--Hb_000230_560 Hb_000260_100 Hb_000260_100 Hb_002997_080--Hb_000260_100 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_003665_060 Hb_003665_060 Hb_000230_560--Hb_003665_060 Hb_000141_250 Hb_000141_250 Hb_000230_560--Hb_000141_250 Hb_003030_070 Hb_003030_070 Hb_000230_560--Hb_003030_070 Hb_007075_040 Hb_007075_040 Hb_000230_560--Hb_007075_040 Hb_004109_280--Hb_002997_080 Hb_004109_280--Hb_000260_100 Hb_002272_130 Hb_002272_130 Hb_004109_280--Hb_002272_130 Hb_027472_120 Hb_027472_120 Hb_004109_280--Hb_027472_120 Hb_004109_280--Hb_000883_020 Hb_000094_300 Hb_000094_300 Hb_000212_330--Hb_000094_300 Hb_008748_040 Hb_008748_040 Hb_000212_330--Hb_008748_040 Hb_000212_330--Hb_008511_130 Hb_054865_120 Hb_054865_120 Hb_000212_330--Hb_054865_120 Hb_000212_330--Hb_000883_020 Hb_000317_470 Hb_000317_470 Hb_032986_010--Hb_000317_470 Hb_032986_010--Hb_002272_130 Hb_023344_120 Hb_023344_120 Hb_032986_010--Hb_023344_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.0845 6.6149 14.4536 8.09364 14.437 15.059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.9328 11.9883 10.9717 10.5017 9.50051

CAGE analysis