Hb_009548_020

Information

Type -
Description -
Location Contig9548: 12297-19992
Sequence    

Annotation

kegg
ID rcu:RCOM_1174740
description structural constituent of cell wall, putative
nr
ID XP_002517918.1
description structural constituent of cell wall, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RVZ9
description Structural constituent of cell wall, putative OS=Ricinus communis GN=RCOM_1174740 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63515: 12396-19936
cDNA
(Sanger)
(ID:Location)		 028_H23.ab1: 13464-19842

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009548_020 0.0 - - structural constituent of cell wall, putative [Ricinus communis]
2 Hb_188063_020 0.0597467665 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002835_370 0.0605320547 - - histone deacetylase 1, 2 ,3, putative [Ricinus communis]
4 Hb_000072_220 0.0615606215 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
5 Hb_006634_070 0.0619658319 - - PREDICTED: calcium-dependent protein kinase 13 [Jatropha curcas]
6 Hb_016172_020 0.0624920786 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
7 Hb_012022_090 0.0641953006 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
8 Hb_172632_080 0.0642688847 - - PREDICTED: uncharacterized protein LOC105141138 isoform X1 [Populus euphratica]
9 Hb_001198_100 0.0665518368 - - PREDICTED: serine hydroxymethyltransferase 7-like [Jatropha curcas]
10 Hb_001409_020 0.0668998661 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105638648 [Jatropha curcas]
11 Hb_028089_010 0.0671746321 - - PREDICTED: homoserine dehydrogenase [Jatropha curcas]
12 Hb_000060_090 0.0700882964 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a [Jatropha curcas]
13 Hb_001141_020 0.0705412947 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
14 Hb_001047_220 0.0706526497 - - PREDICTED: F-box protein SKIP17-like [Jatropha curcas]
15 Hb_105105_020 0.0719369843 - - vacuolar protein sorting vps41, putative [Ricinus communis]
16 Hb_006915_030 0.0719836642 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 8 [Jatropha curcas]
17 Hb_001329_140 0.0722750066 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
18 Hb_010618_010 0.0735876406 - - PREDICTED: inactive poly [ADP-ribose] polymerase RCD1 [Jatropha curcas]
19 Hb_004221_020 0.0742303295 - - protein binding protein, putative [Ricinus communis]
20 Hb_001675_180 0.0749114707 - - PREDICTED: golgin candidate 5 [Jatropha curcas]

Gene co-expression network

sample Hb_009548_020 Hb_009548_020 Hb_188063_020 Hb_188063_020 Hb_009548_020--Hb_188063_020 Hb_002835_370 Hb_002835_370 Hb_009548_020--Hb_002835_370 Hb_000072_220 Hb_000072_220 Hb_009548_020--Hb_000072_220 Hb_006634_070 Hb_006634_070 Hb_009548_020--Hb_006634_070 Hb_016172_020 Hb_016172_020 Hb_009548_020--Hb_016172_020 Hb_012022_090 Hb_012022_090 Hb_009548_020--Hb_012022_090 Hb_004225_050 Hb_004225_050 Hb_188063_020--Hb_004225_050 Hb_002849_100 Hb_002849_100 Hb_188063_020--Hb_002849_100 Hb_028912_050 Hb_028912_050 Hb_188063_020--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_188063_020--Hb_010710_070 Hb_004963_030 Hb_004963_030 Hb_188063_020--Hb_004963_030 Hb_004221_020 Hb_004221_020 Hb_002835_370--Hb_004221_020 Hb_002025_020 Hb_002025_020 Hb_002835_370--Hb_002025_020 Hb_002835_370--Hb_000072_220 Hb_001680_010 Hb_001680_010 Hb_002835_370--Hb_001680_010 Hb_028089_010 Hb_028089_010 Hb_002835_370--Hb_028089_010 Hb_000072_220--Hb_004221_020 Hb_010139_040 Hb_010139_040 Hb_000072_220--Hb_010139_040 Hb_172632_080 Hb_172632_080 Hb_000072_220--Hb_172632_080 Hb_001675_180 Hb_001675_180 Hb_000072_220--Hb_001675_180 Hb_006455_120 Hb_006455_120 Hb_006634_070--Hb_006455_120 Hb_023344_120 Hb_023344_120 Hb_006634_070--Hb_023344_120 Hb_011037_030 Hb_011037_030 Hb_006634_070--Hb_011037_030 Hb_001409_020 Hb_001409_020 Hb_006634_070--Hb_001409_020 Hb_000156_010 Hb_000156_010 Hb_006634_070--Hb_000156_010 Hb_005144_160 Hb_005144_160 Hb_006634_070--Hb_005144_160 Hb_008406_200 Hb_008406_200 Hb_016172_020--Hb_008406_200 Hb_008643_210 Hb_008643_210 Hb_016172_020--Hb_008643_210 Hb_004143_060 Hb_004143_060 Hb_016172_020--Hb_004143_060 Hb_010618_010 Hb_010618_010 Hb_016172_020--Hb_010618_010 Hb_016172_020--Hb_001409_020 Hb_001248_060 Hb_001248_060 Hb_016172_020--Hb_001248_060 Hb_002811_060 Hb_002811_060 Hb_012022_090--Hb_002811_060 Hb_000213_010 Hb_000213_010 Hb_012022_090--Hb_000213_010 Hb_000116_500 Hb_000116_500 Hb_012022_090--Hb_000116_500 Hb_001143_160 Hb_001143_160 Hb_012022_090--Hb_001143_160 Hb_002942_100 Hb_002942_100 Hb_012022_090--Hb_002942_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
46.3632 30.8491 28.0406 35.0984 41.427 57.4536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8446 29.249 53.9088 31.6668 37.6262

CAGE analysis