Hb_009554_020

Information

Type -
Description -
Location Contig9554: 7281-14257
Sequence    

Annotation

kegg
ID cic:CICLE_v10013203mg
description hypothetical protein
nr
ID XP_011084893.1
description PREDICTED: em-like protein GEA6 [Sesamum indicum]
swissprot
ID C6T0L2
description Protein SLE3 OS=Glycine max GN=SLE3 PE=2 SV=1
trembl
ID A0A022QGU2
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a025087mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description late seed maturation protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63525: 7293-8059
cDNA
(Sanger)
(ID:Location)		 005_I22r.ab1: 8211-11759

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009554_020 0.0 - - PREDICTED: em-like protein GEA6 [Sesamum indicum]
2 Hb_005015_040 0.0659669374 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED IMPAIRED RESPONSE 1-like [Nicotiana sylvestris]
3 Hb_007970_030 0.0734111767 - - PREDICTED: 2-alkenal reductase (NADP(+)-dependent)-like isoform X1 [Jatropha curcas]
4 Hb_182291_020 0.0764038638 - - hypothetical protein CICLE_v10029871mg [Citrus clementina]
5 Hb_000116_340 0.079842946 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
6 Hb_003767_020 0.103988627 - - PREDICTED: MLP-like protein 43 [Fragaria vesca subsp. vesca]
7 Hb_000160_340 0.1128779255 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
8 Hb_002893_140 0.1285117149 - - Glycine-rich cell wall structural protein precursor, putative [Ricinus communis]
9 Hb_148146_030 0.1330410508 - - PREDICTED: uncharacterized protein LOC105649266 [Jatropha curcas]
10 Hb_000069_250 0.1476400839 - - hypothetical protein JCGZ_14250 [Jatropha curcas]
11 Hb_000073_070 0.1538865394 - - -
12 Hb_000495_090 0.1549461181 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
13 Hb_105632_010 0.1608795258 - - -
14 Hb_005743_020 0.1608975234 - - -
15 Hb_010578_020 0.1716192856 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_162304_010 0.174893039 - - conserved hypothetical protein [Ricinus communis]
17 Hb_136620_010 0.1750512065 - - PREDICTED: mechanosensitive ion channel protein 10-like [Jatropha curcas]
18 Hb_001274_060 0.1918083506 - - PREDICTED: uncharacterized protein LOC105802656 [Gossypium raimondii]
19 Hb_000206_080 0.1930574482 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
20 Hb_000172_500 0.1951518641 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009554_020 Hb_009554_020 Hb_005015_040 Hb_005015_040 Hb_009554_020--Hb_005015_040 Hb_007970_030 Hb_007970_030 Hb_009554_020--Hb_007970_030 Hb_182291_020 Hb_182291_020 Hb_009554_020--Hb_182291_020 Hb_000116_340 Hb_000116_340 Hb_009554_020--Hb_000116_340 Hb_003767_020 Hb_003767_020 Hb_009554_020--Hb_003767_020 Hb_000160_340 Hb_000160_340 Hb_009554_020--Hb_000160_340 Hb_148146_030 Hb_148146_030 Hb_005015_040--Hb_148146_030 Hb_136620_010 Hb_136620_010 Hb_005015_040--Hb_136620_010 Hb_005015_040--Hb_007970_030 Hb_005015_040--Hb_182291_020 Hb_000206_080 Hb_000206_080 Hb_005015_040--Hb_000206_080 Hb_007970_030--Hb_182291_020 Hb_007970_030--Hb_000116_340 Hb_007970_030--Hb_003767_020 Hb_007970_030--Hb_000160_340 Hb_002893_140 Hb_002893_140 Hb_007970_030--Hb_002893_140 Hb_182291_020--Hb_000116_340 Hb_182291_020--Hb_003767_020 Hb_182291_020--Hb_000160_340 Hb_182291_020--Hb_002893_140 Hb_000116_340--Hb_003767_020 Hb_000116_340--Hb_000160_340 Hb_000116_340--Hb_002893_140 Hb_000073_070 Hb_000073_070 Hb_000116_340--Hb_000073_070 Hb_003767_020--Hb_000160_340 Hb_003767_020--Hb_002893_140 Hb_003767_020--Hb_000073_070 Hb_000160_340--Hb_002893_140 Hb_000160_340--Hb_000073_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0419131 0.310759 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis