Hb_009557_010

Information

Type -
Description -
Location Contig9557: 7736-11827
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009557_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_054343_010 0.1158204417 - - PREDICTED: uncharacterized protein LOC105793279 [Gossypium raimondii]
3 Hb_128193_010 0.1697578672 - - PREDICTED: uncharacterized protein LOC103699534, partial [Phoenix dactylifera]
4 Hb_171900_010 0.1775758765 - - conserved hypothetical protein [Ricinus communis]
5 Hb_023142_010 0.2325860841 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
6 Hb_001629_040 0.239072037 - - hypothetical protein POPTR_0001s41630g [Populus trichocarpa]
7 Hb_000009_010 0.2761596829 - - PREDICTED: ABC transporter G family member 10-like [Jatropha curcas]
8 Hb_010164_040 0.2806639879 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_138607_010 0.2924030094 - - hypothetical protein RCOM_0725500 [Ricinus communis]
10 Hb_097006_010 0.3101858592 - - PREDICTED: uncharacterized protein LOC105632410 [Jatropha curcas]
11 Hb_092855_030 0.3234952938 - - -
12 Hb_006261_010 0.325040764 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
13 Hb_000946_020 0.3250826554 - - hypothetical protein PRUPE_ppa023262mg [Prunus persica]
14 Hb_007757_090 0.3253966632 - - PREDICTED: uncharacterized protein LOC105793478 [Gossypium raimondii]
15 Hb_005625_050 0.3259804999 - - hypothetical protein PRUPE_ppa024499mg, partial [Prunus persica]
16 Hb_001322_090 0.3261520817 - - PREDICTED: uncharacterized protein LOC104607608 [Nelumbo nucifera]
17 Hb_169597_010 0.3271650463 - - PREDICTED: uncharacterized protein LOC104903465 [Beta vulgaris subsp. vulgaris]
18 Hb_003927_030 0.3278098878 - - unnamed protein product [Coffea canephora]
19 Hb_000052_030 0.3279873852 - - -
20 Hb_019299_050 0.3284900906 - - -

Gene co-expression network

sample Hb_009557_010 Hb_009557_010 Hb_054343_010 Hb_054343_010 Hb_009557_010--Hb_054343_010 Hb_128193_010 Hb_128193_010 Hb_009557_010--Hb_128193_010 Hb_171900_010 Hb_171900_010 Hb_009557_010--Hb_171900_010 Hb_023142_010 Hb_023142_010 Hb_009557_010--Hb_023142_010 Hb_001629_040 Hb_001629_040 Hb_009557_010--Hb_001629_040 Hb_000009_010 Hb_000009_010 Hb_009557_010--Hb_000009_010 Hb_054343_010--Hb_171900_010 Hb_138607_010 Hb_138607_010 Hb_054343_010--Hb_138607_010 Hb_054343_010--Hb_023142_010 Hb_054343_010--Hb_128193_010 Hb_000159_030 Hb_000159_030 Hb_054343_010--Hb_000159_030 Hb_128193_010--Hb_001629_040 Hb_128193_010--Hb_000009_010 Hb_128193_010--Hb_023142_010 Hb_031866_030 Hb_031866_030 Hb_128193_010--Hb_031866_030 Hb_009152_030 Hb_009152_030 Hb_128193_010--Hb_009152_030 Hb_000967_030 Hb_000967_030 Hb_171900_010--Hb_000967_030 Hb_171900_010--Hb_000159_030 Hb_159957_020 Hb_159957_020 Hb_171900_010--Hb_159957_020 Hb_019299_050 Hb_019299_050 Hb_171900_010--Hb_019299_050 Hb_097933_010 Hb_097933_010 Hb_023142_010--Hb_097933_010 Hb_188163_010 Hb_188163_010 Hb_023142_010--Hb_188163_010 Hb_023142_010--Hb_171900_010 Hb_010129_020 Hb_010129_020 Hb_023142_010--Hb_010129_020 Hb_001629_040--Hb_000009_010 Hb_001629_040--Hb_031866_030 Hb_001629_040--Hb_009152_030 Hb_002060_040 Hb_002060_040 Hb_001629_040--Hb_002060_040 Hb_033066_030 Hb_033066_030 Hb_001629_040--Hb_033066_030 Hb_000009_010--Hb_031866_030 Hb_000009_010--Hb_002060_040 Hb_000009_010--Hb_033066_030 Hb_000009_010--Hb_009152_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.013058 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0335864 0.020155

CAGE analysis