Hb_009557_030

Information

Type transcription factor
Description TF Family: HB
Location Contig9557: 30260-30841
Sequence    

Annotation

kegg
ID rcu:RCOM_1172120
description homeobox protein, putative
nr
ID XP_012088207.1
description PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]
swissprot
ID Q9FN29
description Homeobox-leucine zipper protein ATHB-52 OS=Arabidopsis thaliana GN=ATHB-52 PE=2 SV=1
trembl
ID A0A067JVR1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25732 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein athb-52-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009557_030 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein ATHB-52-like [Jatropha curcas]
2 Hb_001191_080 0.1270054857 - - protein with unknown function [Ricinus communis]
3 Hb_003147_060 0.1347021639 - - syntaxin, plant, putative [Ricinus communis]
4 Hb_000120_810 0.137083584 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
5 Hb_000256_090 0.1373691077 - - PREDICTED: uncharacterized protein LOC105637579 [Jatropha curcas]
6 Hb_000538_240 0.1380363325 - - PREDICTED: uncharacterized protein LOC105643073 [Jatropha curcas]
7 Hb_002092_120 0.1386057386 - - PREDICTED: peptidyl-tRNA hydrolase, chloroplastic [Jatropha curcas]
8 Hb_002869_050 0.1393980735 - - PREDICTED: transmembrane and coiled-coil domain-containing protein 1 [Jatropha curcas]
9 Hb_005245_120 0.1403262525 - - XPA-binding protein, putative [Ricinus communis]
10 Hb_000395_040 0.1467451583 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
11 Hb_040819_010 0.1471745581 - - protein phosphatase 2c, putative [Ricinus communis]
12 Hb_011344_200 0.1497175063 - - cytoplasmic ribosomal protein S13 [Panax ginseng]
13 Hb_007741_130 0.1506156107 - - hypothetical protein B456_007G089000 [Gossypium raimondii]
14 Hb_004079_130 0.1515405072 - - PREDICTED: uncharacterized protein LOC105637708 [Jatropha curcas]
15 Hb_004117_190 0.1525786642 - - PREDICTED: uncharacterized protein LOC105649109 [Jatropha curcas]
16 Hb_000580_100 0.1530760236 - - PREDICTED: uncharacterized protein LOC105643133 isoform X1 [Jatropha curcas]
17 Hb_000926_200 0.1531084598 transcription factor TF Family: Rcd1-like PREDICTED: cell differentiation protein RCD1 homolog isoform X1 [Jatropha curcas]
18 Hb_000258_420 0.1573215962 - - sucrose transporter 2A [Hevea brasiliensis]
19 Hb_010098_020 0.1579788878 - - PREDICTED: protein BOLA4, chloroplastic/mitochondrial [Jatropha curcas]
20 Hb_155215_020 0.1609770964 - - PREDICTED: RNA-binding protein pno1-like [Populus euphratica]

Gene co-expression network

sample Hb_009557_030 Hb_009557_030 Hb_001191_080 Hb_001191_080 Hb_009557_030--Hb_001191_080 Hb_003147_060 Hb_003147_060 Hb_009557_030--Hb_003147_060 Hb_000120_810 Hb_000120_810 Hb_009557_030--Hb_000120_810 Hb_000256_090 Hb_000256_090 Hb_009557_030--Hb_000256_090 Hb_000538_240 Hb_000538_240 Hb_009557_030--Hb_000538_240 Hb_002092_120 Hb_002092_120 Hb_009557_030--Hb_002092_120 Hb_007741_130 Hb_007741_130 Hb_001191_080--Hb_007741_130 Hb_004712_190 Hb_004712_190 Hb_001191_080--Hb_004712_190 Hb_021576_150 Hb_021576_150 Hb_001191_080--Hb_021576_150 Hb_000926_200 Hb_000926_200 Hb_001191_080--Hb_000926_200 Hb_014231_020 Hb_014231_020 Hb_001191_080--Hb_014231_020 Hb_005245_120 Hb_005245_120 Hb_001191_080--Hb_005245_120 Hb_003925_040 Hb_003925_040 Hb_003147_060--Hb_003925_040 Hb_000925_030 Hb_000925_030 Hb_003147_060--Hb_000925_030 Hb_002869_050 Hb_002869_050 Hb_003147_060--Hb_002869_050 Hb_006452_180 Hb_006452_180 Hb_003147_060--Hb_006452_180 Hb_004108_240 Hb_004108_240 Hb_003147_060--Hb_004108_240 Hb_009545_090 Hb_009545_090 Hb_003147_060--Hb_009545_090 Hb_000704_030 Hb_000704_030 Hb_000120_810--Hb_000704_030 Hb_026198_010 Hb_026198_010 Hb_000120_810--Hb_026198_010 Hb_004079_130 Hb_004079_130 Hb_000120_810--Hb_004079_130 Hb_000603_160 Hb_000603_160 Hb_000120_810--Hb_000603_160 Hb_189216_010 Hb_189216_010 Hb_000120_810--Hb_189216_010 Hb_000680_120 Hb_000680_120 Hb_000120_810--Hb_000680_120 Hb_026048_110 Hb_026048_110 Hb_000256_090--Hb_026048_110 Hb_000230_460 Hb_000230_460 Hb_000256_090--Hb_000230_460 Hb_000003_680 Hb_000003_680 Hb_000256_090--Hb_000003_680 Hb_005563_070 Hb_005563_070 Hb_000256_090--Hb_005563_070 Hb_001178_010 Hb_001178_010 Hb_000256_090--Hb_001178_010 Hb_000256_090--Hb_001191_080 Hb_005463_050 Hb_005463_050 Hb_000538_240--Hb_005463_050 Hb_011671_480 Hb_011671_480 Hb_000538_240--Hb_011671_480 Hb_002232_040 Hb_002232_040 Hb_000538_240--Hb_002232_040 Hb_002631_280 Hb_002631_280 Hb_000538_240--Hb_002631_280 Hb_001221_220 Hb_001221_220 Hb_000538_240--Hb_001221_220 Hb_001911_040 Hb_001911_040 Hb_000538_240--Hb_001911_040 Hb_008225_090 Hb_008225_090 Hb_002092_120--Hb_008225_090 Hb_000300_260 Hb_000300_260 Hb_002092_120--Hb_000300_260 Hb_000176_020 Hb_000176_020 Hb_002092_120--Hb_000176_020 Hb_002893_040 Hb_002893_040 Hb_002092_120--Hb_002893_040 Hb_002572_020 Hb_002572_020 Hb_002092_120--Hb_002572_020 Hb_000270_470 Hb_000270_470 Hb_002092_120--Hb_000270_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.330555 0.633928 0.759211 0.982825 0.180024 0.12167
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.317077 0.664478 0.144599 0.20476 0.319871

CAGE analysis