Hb_009557_050

Information

Type transcription factor
Description TF Family: C2H2
Location Contig9557: 37622-39856
Sequence    

Annotation

kegg
ID pop:POPTR_0017s04840g
description zinc finger family protein
nr
ID XP_006372765.1
description zinc finger family protein [Populus trichocarpa]
swissprot
ID Q9FFH3
description Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1
trembl
ID U5FMI7
description Zinc finger family protein OS=Populus trichocarpa GN=POPTR_0017s04840g PE=4 SV=1
Gene Ontology
ID GO:0003676
description zinc finger protein magpie-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63532: 38437-39315
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009557_050 0.0 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
2 Hb_008406_030 0.1114654957 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
3 Hb_004241_200 0.1415495702 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
4 Hb_000003_760 0.1424709919 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]
5 Hb_001472_140 0.1467421231 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
6 Hb_002234_130 0.1484870528 - - ATPP2-A13, putative [Ricinus communis]
7 Hb_019026_030 0.1532523499 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
8 Hb_027905_010 0.1597476408 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
9 Hb_003209_090 0.1660642022 - - Xyloglucan endotransglucosylase/hydrolase family protein [Theobroma cacao]
10 Hb_000336_190 0.1698689565 - - PREDICTED: UPF0481 protein At3g47200-like [Gossypium raimondii]
11 Hb_009421_050 0.1707107178 - - PREDICTED: uncharacterized protein LOC105647037 [Jatropha curcas]
12 Hb_002875_070 0.1718445924 - - PREDICTED: probable mitochondrial chaperone BCS1-A [Jatropha curcas]
13 Hb_003209_040 0.1719653673 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
14 Hb_000692_230 0.1759661906 - - phospholipase d delta, putative [Ricinus communis]
15 Hb_001195_650 0.1787235365 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
16 Hb_000836_210 0.1820223673 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
17 Hb_182970_010 0.1843544403 - - calmodulin-binding protein 60-D [Populus trichocarpa]
18 Hb_049915_010 0.1857556853 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
19 Hb_178658_010 0.1859708638 - - PREDICTED: uncharacterized protein LOC105641396 [Jatropha curcas]
20 Hb_001329_080 0.1875630495 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]

Gene co-expression network

sample Hb_009557_050 Hb_009557_050 Hb_008406_030 Hb_008406_030 Hb_009557_050--Hb_008406_030 Hb_004241_200 Hb_004241_200 Hb_009557_050--Hb_004241_200 Hb_000003_760 Hb_000003_760 Hb_009557_050--Hb_000003_760 Hb_001472_140 Hb_001472_140 Hb_009557_050--Hb_001472_140 Hb_002234_130 Hb_002234_130 Hb_009557_050--Hb_002234_130 Hb_019026_030 Hb_019026_030 Hb_009557_050--Hb_019026_030 Hb_008406_030--Hb_004241_200 Hb_008406_030--Hb_001472_140 Hb_001195_650 Hb_001195_650 Hb_008406_030--Hb_001195_650 Hb_004297_080 Hb_004297_080 Hb_008406_030--Hb_004297_080 Hb_027905_010 Hb_027905_010 Hb_008406_030--Hb_027905_010 Hb_003209_040 Hb_003209_040 Hb_004241_200--Hb_003209_040 Hb_004241_200--Hb_001195_650 Hb_000638_180 Hb_000638_180 Hb_004241_200--Hb_000638_180 Hb_003209_090 Hb_003209_090 Hb_004241_200--Hb_003209_090 Hb_000983_110 Hb_000983_110 Hb_004241_200--Hb_000983_110 Hb_001787_070 Hb_001787_070 Hb_000003_760--Hb_001787_070 Hb_000336_190 Hb_000336_190 Hb_000003_760--Hb_000336_190 Hb_111881_030 Hb_111881_030 Hb_000003_760--Hb_111881_030 Hb_001956_190 Hb_001956_190 Hb_000003_760--Hb_001956_190 Hb_178658_010 Hb_178658_010 Hb_000003_760--Hb_178658_010 Hb_001329_080 Hb_001329_080 Hb_001472_140--Hb_001329_080 Hb_000836_210 Hb_000836_210 Hb_001472_140--Hb_000836_210 Hb_001472_140--Hb_004297_080 Hb_002875_070 Hb_002875_070 Hb_001472_140--Hb_002875_070 Hb_005408_080 Hb_005408_080 Hb_001472_140--Hb_005408_080 Hb_002234_130--Hb_000836_210 Hb_002234_130--Hb_002875_070 Hb_002234_130--Hb_000336_190 Hb_002234_130--Hb_001472_140 Hb_009421_050 Hb_009421_050 Hb_002234_130--Hb_009421_050 Hb_004143_050 Hb_004143_050 Hb_019026_030--Hb_004143_050 Hb_019026_030--Hb_003209_040 Hb_019026_030--Hb_027905_010 Hb_001213_140 Hb_001213_140 Hb_019026_030--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_019026_030--Hb_000777_020 Hb_000827_090 Hb_000827_090 Hb_019026_030--Hb_000827_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0427931 1.19804 0.328252 1.30095 0 0.0578429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.150263 0.0945746 0.088955 0.075467 0.198127

CAGE analysis