Hb_009558_020

Information

Type -
Description -
Location Contig9558: 29227-30570
Sequence    

Annotation

kegg
ID mdm:103433415
description E3 ubiquitin-protein ligase UBR1
nr
ID XP_012074935.1
description PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
swissprot
ID F4KCC2
description E3 ubiquitin-protein ligase PRT6 OS=Arabidopsis thaliana GN=PRT6 PE=2 SV=1
trembl
ID A0A067KUW3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09072 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase ubr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63538: 30372-30629
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009558_020 0.0 - - PREDICTED: E3 ubiquitin-protein ligase PRT6 isoform X1 [Jatropha curcas]
2 Hb_000175_070 0.0747683036 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
3 Hb_006788_070 0.0827943681 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
4 Hb_000671_100 0.0889500154 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
5 Hb_010261_020 0.0899796281 - - hypothetical protein JCGZ_17258 [Jatropha curcas]
6 Hb_000365_360 0.0905462407 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
7 Hb_007193_100 0.0913858768 - - syntaxin family protein [Populus trichocarpa]
8 Hb_000705_260 0.094243662 - - conserved hypothetical protein [Ricinus communis]
9 Hb_015057_010 0.0989478867 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
10 Hb_005539_290 0.0994313692 - - unknown [Lotus japonicus]
11 Hb_000442_160 0.0997816523 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
12 Hb_000317_430 0.1015621939 transcription factor TF Family: SET PREDICTED: ribosomal lysine N-methyltransferase 3 [Jatropha curcas]
13 Hb_002014_080 0.1026696623 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
14 Hb_001902_050 0.1027969125 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
15 Hb_001855_010 0.1035487529 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
16 Hb_004453_150 0.1041901819 - - BnaC02g13240D [Brassica napus]
17 Hb_001454_140 0.1053570181 - - protein arginine n-methyltransferase, putative [Ricinus communis]
18 Hb_004143_110 0.1063044522 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
19 Hb_000963_190 0.1082659124 - - Glutamine amidotransferase subunit pdxT, putative [Ricinus communis]
20 Hb_003453_010 0.1084764725 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_009558_020 Hb_009558_020 Hb_000175_070 Hb_000175_070 Hb_009558_020--Hb_000175_070 Hb_006788_070 Hb_006788_070 Hb_009558_020--Hb_006788_070 Hb_000671_100 Hb_000671_100 Hb_009558_020--Hb_000671_100 Hb_010261_020 Hb_010261_020 Hb_009558_020--Hb_010261_020 Hb_000365_360 Hb_000365_360 Hb_009558_020--Hb_000365_360 Hb_007193_100 Hb_007193_100 Hb_009558_020--Hb_007193_100 Hb_000175_070--Hb_007193_100 Hb_000317_430 Hb_000317_430 Hb_000175_070--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_000175_070--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_000175_070--Hb_118419_020 Hb_000175_070--Hb_006788_070 Hb_000023_140 Hb_000023_140 Hb_006788_070--Hb_000023_140 Hb_011310_070 Hb_011310_070 Hb_006788_070--Hb_011310_070 Hb_005063_040 Hb_005063_040 Hb_006788_070--Hb_005063_040 Hb_006788_070--Hb_007193_100 Hb_024714_030 Hb_024714_030 Hb_000671_100--Hb_024714_030 Hb_002014_080 Hb_002014_080 Hb_000671_100--Hb_002014_080 Hb_010298_010 Hb_010298_010 Hb_000671_100--Hb_010298_010 Hb_035524_030 Hb_035524_030 Hb_000671_100--Hb_035524_030 Hb_014568_030 Hb_014568_030 Hb_000671_100--Hb_014568_030 Hb_005288_120 Hb_005288_120 Hb_010261_020--Hb_005288_120 Hb_013405_130 Hb_013405_130 Hb_010261_020--Hb_013405_130 Hb_010261_020--Hb_010298_010 Hb_010261_020--Hb_000671_100 Hb_000700_090 Hb_000700_090 Hb_010261_020--Hb_000700_090 Hb_098709_010 Hb_098709_010 Hb_000365_360--Hb_098709_010 Hb_000365_360--Hb_000317_430 Hb_001369_060 Hb_001369_060 Hb_000365_360--Hb_001369_060 Hb_000365_360--Hb_002014_080 Hb_000035_380 Hb_000035_380 Hb_000365_360--Hb_000035_380 Hb_000365_360--Hb_118419_020 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_007193_100--Hb_000317_430 Hb_007193_100--Hb_029510_140 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.3942 3.12706 2.46835 8.92367 22.2715 49.8173
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.1641 20.4493 20.2887 8.85775 6.27134

CAGE analysis