Hb_009558_030

Information

Type -
Description -
Location Contig9558: 35602-36935
Sequence    

Annotation

kegg
ID rcu:RCOM_0915890
description myb3r3, putative
nr
ID XP_002532327.1
description myb3r3, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T258
description Myb3r3, putative OS=Ricinus communis GN=RCOM_0915890 PE=4 SV=1
Gene Ontology
ID GO:0003677
description isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009558_030 0.0 - - myb3r3, putative [Ricinus communis]
2 Hb_000028_280 0.0765423966 transcription factor TF Family: NF-X1 PREDICTED: NF-X1-type zinc finger protein NFXL1 [Jatropha curcas]
3 Hb_012035_050 0.0767205412 - - hypothetical protein JCGZ_10788 [Jatropha curcas]
4 Hb_008554_130 0.0770558063 transcription factor TF Family: MYB PREDICTED: uncharacterized protein LOC105634317 [Jatropha curcas]
5 Hb_000329_470 0.0801752825 - - ccr4-not transcription complex, putative [Ricinus communis]
6 Hb_000343_120 0.0820553369 - - PREDICTED: pentatricopeptide repeat-containing protein At3g16010 [Jatropha curcas]
7 Hb_000680_160 0.0841813065 - - PREDICTED: protein FLX-like 3 [Jatropha curcas]
8 Hb_000205_100 0.0851265065 - - PREDICTED: exportin-4 [Jatropha curcas]
9 Hb_007254_070 0.087218993 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
10 Hb_005054_090 0.0907223674 - - PREDICTED: uncharacterized protein At2g39910 isoform X1 [Jatropha curcas]
11 Hb_000193_190 0.0918230769 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
12 Hb_001579_220 0.0925232521 - - PREDICTED: pantothenate kinase 1 [Jatropha curcas]
13 Hb_002903_060 0.0925393356 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
14 Hb_000191_150 0.0926408577 - - PREDICTED: uncharacterized protein LOC105637951 [Jatropha curcas]
15 Hb_003226_180 0.093078544 - - PREDICTED: uncharacterized protein C57A7.06 [Jatropha curcas]
16 Hb_000092_170 0.0948115627 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 14 [Jatropha curcas]
17 Hb_000225_040 0.0954602143 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
18 Hb_120327_010 0.0955156048 - - PREDICTED: uncharacterized protein LOC105650959 [Jatropha curcas]
19 Hb_004800_080 0.0957489748 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
20 Hb_005730_090 0.0959663177 - - PREDICTED: uncharacterized protein LOC105631484 [Jatropha curcas]

Gene co-expression network

sample Hb_009558_030 Hb_009558_030 Hb_000028_280 Hb_000028_280 Hb_009558_030--Hb_000028_280 Hb_012035_050 Hb_012035_050 Hb_009558_030--Hb_012035_050 Hb_008554_130 Hb_008554_130 Hb_009558_030--Hb_008554_130 Hb_000329_470 Hb_000329_470 Hb_009558_030--Hb_000329_470 Hb_000343_120 Hb_000343_120 Hb_009558_030--Hb_000343_120 Hb_000680_160 Hb_000680_160 Hb_009558_030--Hb_000680_160 Hb_000028_280--Hb_000343_120 Hb_002740_110 Hb_002740_110 Hb_000028_280--Hb_002740_110 Hb_004143_130 Hb_004143_130 Hb_000028_280--Hb_004143_130 Hb_003605_110 Hb_003605_110 Hb_000028_280--Hb_003605_110 Hb_003253_040 Hb_003253_040 Hb_000028_280--Hb_003253_040 Hb_004994_220 Hb_004994_220 Hb_000028_280--Hb_004994_220 Hb_001579_220 Hb_001579_220 Hb_012035_050--Hb_001579_220 Hb_000170_070 Hb_000170_070 Hb_012035_050--Hb_000170_070 Hb_000111_420 Hb_000111_420 Hb_012035_050--Hb_000111_420 Hb_012035_050--Hb_000329_470 Hb_155159_030 Hb_155159_030 Hb_012035_050--Hb_155159_030 Hb_004800_080 Hb_004800_080 Hb_008554_130--Hb_004800_080 Hb_009767_110 Hb_009767_110 Hb_008554_130--Hb_009767_110 Hb_005496_130 Hb_005496_130 Hb_008554_130--Hb_005496_130 Hb_044728_010 Hb_044728_010 Hb_008554_130--Hb_044728_010 Hb_001369_730 Hb_001369_730 Hb_008554_130--Hb_001369_730 Hb_167498_010 Hb_167498_010 Hb_008554_130--Hb_167498_010 Hb_003158_010 Hb_003158_010 Hb_000329_470--Hb_003158_010 Hb_003226_180 Hb_003226_180 Hb_000329_470--Hb_003226_180 Hb_000329_470--Hb_167498_010 Hb_000225_040 Hb_000225_040 Hb_000329_470--Hb_000225_040 Hb_000329_470--Hb_001369_730 Hb_000329_470--Hb_001579_220 Hb_000166_130 Hb_000166_130 Hb_000343_120--Hb_000166_130 Hb_000035_290 Hb_000035_290 Hb_000343_120--Hb_000035_290 Hb_009545_100 Hb_009545_100 Hb_000343_120--Hb_009545_100 Hb_001199_100 Hb_001199_100 Hb_000343_120--Hb_001199_100 Hb_003029_110 Hb_003029_110 Hb_000343_120--Hb_003029_110 Hb_000032_270 Hb_000032_270 Hb_000680_160--Hb_000032_270 Hb_002078_350 Hb_002078_350 Hb_000680_160--Hb_002078_350 Hb_003428_030 Hb_003428_030 Hb_000680_160--Hb_003428_030 Hb_003525_010 Hb_003525_010 Hb_000680_160--Hb_003525_010 Hb_000680_160--Hb_001579_220 Hb_005188_080 Hb_005188_080 Hb_000680_160--Hb_005188_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.34551 3.56845 1.05731 2.40949 4.62657 4.37714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.29847 4.12188 3.17372 3.67697 3.46403

CAGE analysis