Hb_009564_030

Information

Type transcription factor
Description TF Family: bHLH
Location Contig9564: 47775-49811
Sequence    

Annotation

kegg
ID rcu:RCOM_0864470
description Transcription factor AtMYC2, putative (EC:1.3.1.74)
nr
ID XP_002519814.1
description Transcription factor AtMYC2, putative [Ricinus communis]
swissprot
ID Q39204
description Transcription factor MYC2 OS=Arabidopsis thaliana GN=MYC2 PE=1 SV=2
trembl
ID B9S1E9
description Transcription factor AtMYC2, putative OS=Ricinus communis GN=RCOM_0864470 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myc2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009564_030 0.0 transcription factor TF Family: bHLH Transcription factor AtMYC2, putative [Ricinus communis]
2 Hb_012807_050 0.0928889355 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
3 Hb_170487_020 0.0967526808 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
4 Hb_000229_020 0.0967991094 - - PREDICTED: pentatricopeptide repeat-containing protein At1g03540 [Jatropha curcas]
5 Hb_000322_150 0.0973550862 transcription factor TF Family: TRAF PREDICTED: regulatory protein NPR1 isoform X1 [Jatropha curcas]
6 Hb_000592_090 0.0991770079 - - PREDICTED: pentatricopeptide repeat-containing protein At3g18020 [Jatropha curcas]
7 Hb_076693_020 0.1002085505 - - hypothetical protein CISIN_1g0121812mg, partial [Citrus sinensis]
8 Hb_004767_050 0.1005209758 - - PREDICTED: glycosyltransferase family protein 64 C3-like [Jatropha curcas]
9 Hb_001005_190 0.103963262 - - PREDICTED: UPF0496 protein At3g19330-like isoform X1 [Jatropha curcas]
10 Hb_005675_040 0.1088711749 transcription factor TF Family: ERF unnamed protein product [Vitis vinifera]
11 Hb_010172_090 0.1117353776 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000175_220 0.1121902596 - - PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Jatropha curcas]
13 Hb_093084_070 0.1125671669 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
14 Hb_003052_140 0.1144677057 - - s-adenosylmethionine decarboxylase, putative [Ricinus communis]
15 Hb_009701_010 0.1145615061 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
16 Hb_004785_060 0.1149718153 - - PREDICTED: SKP1-interacting partner 15 [Jatropha curcas]
17 Hb_000832_030 0.1167138256 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634915 [Jatropha curcas]
18 Hb_093084_060 0.1172971352 - - PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g64310 [Jatropha curcas]
19 Hb_009767_100 0.1174990506 - - PREDICTED: FRIGIDA-like protein 4a [Jatropha curcas]
20 Hb_011491_010 0.1179652704 - - Protein YME1, putative [Ricinus communis]

Gene co-expression network

sample Hb_009564_030 Hb_009564_030 Hb_012807_050 Hb_012807_050 Hb_009564_030--Hb_012807_050 Hb_170487_020 Hb_170487_020 Hb_009564_030--Hb_170487_020 Hb_000229_020 Hb_000229_020 Hb_009564_030--Hb_000229_020 Hb_000322_150 Hb_000322_150 Hb_009564_030--Hb_000322_150 Hb_000592_090 Hb_000592_090 Hb_009564_030--Hb_000592_090 Hb_076693_020 Hb_076693_020 Hb_009564_030--Hb_076693_020 Hb_004785_060 Hb_004785_060 Hb_012807_050--Hb_004785_060 Hb_012807_050--Hb_000229_020 Hb_010172_090 Hb_010172_090 Hb_012807_050--Hb_010172_090 Hb_012807_050--Hb_076693_020 Hb_000000_370 Hb_000000_370 Hb_012807_050--Hb_000000_370 Hb_004767_050 Hb_004767_050 Hb_012807_050--Hb_004767_050 Hb_005048_130 Hb_005048_130 Hb_170487_020--Hb_005048_130 Hb_001005_190 Hb_001005_190 Hb_170487_020--Hb_001005_190 Hb_008103_060 Hb_008103_060 Hb_170487_020--Hb_008103_060 Hb_003370_030 Hb_003370_030 Hb_170487_020--Hb_003370_030 Hb_002043_140 Hb_002043_140 Hb_170487_020--Hb_002043_140 Hb_000229_020--Hb_010172_090 Hb_045793_010 Hb_045793_010 Hb_000229_020--Hb_045793_010 Hb_015807_070 Hb_015807_070 Hb_000229_020--Hb_015807_070 Hb_000827_070 Hb_000827_070 Hb_000229_020--Hb_000827_070 Hb_006316_040 Hb_006316_040 Hb_000229_020--Hb_006316_040 Hb_000322_150--Hb_076693_020 Hb_000441_070 Hb_000441_070 Hb_000322_150--Hb_000441_070 Hb_002636_100 Hb_002636_100 Hb_000322_150--Hb_002636_100 Hb_000092_020 Hb_000092_020 Hb_000322_150--Hb_000092_020 Hb_011491_010 Hb_011491_010 Hb_000322_150--Hb_011491_010 Hb_001828_130 Hb_001828_130 Hb_000322_150--Hb_001828_130 Hb_000592_090--Hb_004767_050 Hb_000592_090--Hb_076693_020 Hb_004602_040 Hb_004602_040 Hb_000592_090--Hb_004602_040 Hb_000592_090--Hb_000322_150 Hb_093084_060 Hb_093084_060 Hb_000592_090--Hb_093084_060 Hb_074969_010 Hb_074969_010 Hb_000592_090--Hb_074969_010 Hb_076693_020--Hb_045793_010 Hb_076693_020--Hb_000441_070 Hb_023827_040 Hb_023827_040 Hb_076693_020--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_076693_020--Hb_000025_360 Hb_006847_040 Hb_006847_040 Hb_076693_020--Hb_006847_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
88.9356 99.3772 15.5052 36.1043 50.9019 60.2142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
33.2602 65.5649 53.9761 56.3339 20.3466

CAGE analysis