Hb_009581_050

Information

Type -
Description -
Location Contig9581: 65645-67115
Sequence    

Annotation

kegg
ID pmum:103325389
description probable LRR receptor-like serine/threonine-protein kinase At1g56140
nr
ID KDO77510.1
description hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A0A067GFR8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0025812mg PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable lrr receptor-like serine threonine-protein kinase at1g56140-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63612: 44198-66639
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009581_050 0.0 - - hypothetical protein CISIN_1g0025812mg, partial [Citrus sinensis]
2 Hb_000407_080 0.0733731203 - - 1-aminocyclopropane-1-carboxylate oxidase [Hevea brasiliensis]
3 Hb_012807_060 0.0762244304 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_002007_140 0.0767501751 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein NUTCRACKER-like [Populus euphratica]
5 Hb_003807_020 0.0822478721 - - PREDICTED: subtilisin-like protease SBT2.5 [Jatropha curcas]
6 Hb_000335_050 0.0835425266 - - PREDICTED: CASP-like protein 4A1 isoform X1 [Jatropha curcas]
7 Hb_003430_020 0.0867926127 - - PREDICTED: aldehyde dehydrogenase family 2 member B7, mitochondrial-like [Jatropha curcas]
8 Hb_134017_010 0.0872168523 - - kinase, putative [Ricinus communis]
9 Hb_013914_020 0.0925353338 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Jatropha curcas]
10 Hb_003052_120 0.1019088284 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
11 Hb_094637_010 0.1021556805 - - PREDICTED: uncharacterized protein LOC105642042 [Jatropha curcas]
12 Hb_003788_010 0.1055475613 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
13 Hb_000579_180 0.1068036303 transcription factor TF Family: bZIP PREDICTED: ocs element-binding factor 1-like [Jatropha curcas]
14 Hb_003439_090 0.1082062028 - - kinase, putative [Ricinus communis]
15 Hb_000934_290 0.1090617625 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001862_060 0.1154343271 - - PREDICTED: uncharacterized protein LOC105639802 isoform X1 [Jatropha curcas]
17 Hb_000586_100 0.1157059672 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002551_090 0.1157993819 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
19 Hb_111582_010 0.1164086571 - - hypothetical protein POPTR_0303s002201g, partial [Populus trichocarpa]
20 Hb_000045_180 0.1183451737 - - aquaporin PIP1 [Hevea brasiliensis]

Gene co-expression network

sample Hb_009581_050 Hb_009581_050 Hb_000407_080 Hb_000407_080 Hb_009581_050--Hb_000407_080 Hb_012807_060 Hb_012807_060 Hb_009581_050--Hb_012807_060 Hb_002007_140 Hb_002007_140 Hb_009581_050--Hb_002007_140 Hb_003807_020 Hb_003807_020 Hb_009581_050--Hb_003807_020 Hb_000335_050 Hb_000335_050 Hb_009581_050--Hb_000335_050 Hb_003430_020 Hb_003430_020 Hb_009581_050--Hb_003430_020 Hb_013914_020 Hb_013914_020 Hb_000407_080--Hb_013914_020 Hb_000586_100 Hb_000586_100 Hb_000407_080--Hb_000586_100 Hb_134017_010 Hb_134017_010 Hb_000407_080--Hb_134017_010 Hb_003439_090 Hb_003439_090 Hb_000407_080--Hb_003439_090 Hb_000407_080--Hb_003807_020 Hb_003052_120 Hb_003052_120 Hb_012807_060--Hb_003052_120 Hb_002551_090 Hb_002551_090 Hb_012807_060--Hb_002551_090 Hb_000579_180 Hb_000579_180 Hb_012807_060--Hb_000579_180 Hb_012807_060--Hb_003430_020 Hb_008226_120 Hb_008226_120 Hb_012807_060--Hb_008226_120 Hb_002007_140--Hb_003807_020 Hb_012753_200 Hb_012753_200 Hb_002007_140--Hb_012753_200 Hb_019229_020 Hb_019229_020 Hb_002007_140--Hb_019229_020 Hb_017866_020 Hb_017866_020 Hb_002007_140--Hb_017866_020 Hb_002007_140--Hb_000335_050 Hb_003807_020--Hb_000335_050 Hb_003807_020--Hb_000579_180 Hb_004447_020 Hb_004447_020 Hb_003807_020--Hb_004447_020 Hb_002391_350 Hb_002391_350 Hb_003807_020--Hb_002391_350 Hb_010926_010 Hb_010926_010 Hb_000335_050--Hb_010926_010 Hb_000335_050--Hb_002391_350 Hb_000335_050--Hb_000579_180 Hb_000335_050--Hb_004447_020 Hb_009581_040 Hb_009581_040 Hb_003430_020--Hb_009581_040 Hb_003430_020--Hb_134017_010 Hb_003430_020--Hb_003439_090 Hb_005183_200 Hb_005183_200 Hb_003430_020--Hb_005183_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 7.35071 1.07236 4.11907 0.0151948 0.0686631
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0691447 0.0271976 0 9.33741 1.07689

CAGE analysis