Hb_009588_010

Information

Type -
Description -
Location Contig9588: 4352-8777
Sequence    

Annotation

kegg
ID rcu:RCOM_0926370
description sigma factor sigb regulation protein rsbq, putative
nr
ID XP_002515580.1
description sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
swissprot
ID Q10QA5
description Probable strigolactone esterase D14 OS=Oryza sativa subsp. japonica GN=D14 PE=1 SV=1
trembl
ID B9RPB1
description Sigma factor sigb regulation protein rsbq, putative OS=Ricinus communis GN=RCOM_0926370 PE=4 SV=1
Gene Ontology
ID GO:0016787
description probable strigolactone esterase d14 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_63615: 4285-8695 , PASA_asmbl_63616: 6661-6768
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009588_010 0.0 - - sigma factor sigb regulation protein rsbq, putative [Ricinus communis]
2 Hb_002028_020 0.030168526 - - acyltransferase, putative [Ricinus communis]
3 Hb_000418_130 0.0310244656 - - PREDICTED: photosystem I reaction center subunit psaK, chloroplastic [Jatropha curcas]
4 Hb_001488_230 0.0367163109 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
5 Hb_004032_400 0.048320209 - - PREDICTED: uncharacterized transporter YBR287W-like [Jatropha curcas]
6 Hb_000042_280 0.0498937006 - - chlorophyll A/B binding protein, putative [Ricinus communis]
7 Hb_003734_070 0.0509305278 - - chlorophyll A/B binding protein, putative [Ricinus communis]
8 Hb_068580_010 0.0599253823 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
9 Hb_000557_070 0.0623976206 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
10 Hb_149644_030 0.0631491753 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
11 Hb_001571_100 0.0642240236 - - chlorophyll A-B binding family protein [Populus trichocarpa]
12 Hb_000077_020 0.0706383974 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001735_040 0.0725312543 - - PREDICTED: F-box protein SKIP2-like isoform X2 [Populus euphratica]
14 Hb_004880_020 0.0729458062 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
15 Hb_146255_030 0.0737315693 transcription factor TF Family: bZIP PREDICTED: transcription factor HY5-like [Jatropha curcas]
16 Hb_002328_080 0.0757438222 - - short-chain dehydrogenase, putative [Ricinus communis]
17 Hb_004837_010 0.0759601927 - - PREDICTED: aldehyde dehydrogenase family 3 member F1-like [Jatropha curcas]
18 Hb_002078_330 0.0770261875 - - lipid binding protein, putative [Ricinus communis]
19 Hb_002752_020 0.077369885 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
20 Hb_000333_010 0.0780517082 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]

Gene co-expression network

sample Hb_009588_010 Hb_009588_010 Hb_002028_020 Hb_002028_020 Hb_009588_010--Hb_002028_020 Hb_000418_130 Hb_000418_130 Hb_009588_010--Hb_000418_130 Hb_001488_230 Hb_001488_230 Hb_009588_010--Hb_001488_230 Hb_004032_400 Hb_004032_400 Hb_009588_010--Hb_004032_400 Hb_000042_280 Hb_000042_280 Hb_009588_010--Hb_000042_280 Hb_003734_070 Hb_003734_070 Hb_009588_010--Hb_003734_070 Hb_002028_020--Hb_001488_230 Hb_002028_020--Hb_000418_130 Hb_001571_100 Hb_001571_100 Hb_002028_020--Hb_001571_100 Hb_002028_020--Hb_000042_280 Hb_149644_030 Hb_149644_030 Hb_002028_020--Hb_149644_030 Hb_000418_130--Hb_000042_280 Hb_000418_130--Hb_004032_400 Hb_000418_130--Hb_001488_230 Hb_002752_020 Hb_002752_020 Hb_000418_130--Hb_002752_020 Hb_001488_230--Hb_000042_280 Hb_001488_230--Hb_149644_030 Hb_001488_230--Hb_004032_400 Hb_146255_030 Hb_146255_030 Hb_004032_400--Hb_146255_030 Hb_004032_400--Hb_002752_020 Hb_004837_010 Hb_004837_010 Hb_004032_400--Hb_004837_010 Hb_004032_400--Hb_002028_020 Hb_012098_100 Hb_012098_100 Hb_000042_280--Hb_012098_100 Hb_000042_280--Hb_149644_030 Hb_000077_020 Hb_000077_020 Hb_003734_070--Hb_000077_020 Hb_068580_010 Hb_068580_010 Hb_003734_070--Hb_068580_010 Hb_004880_020 Hb_004880_020 Hb_003734_070--Hb_004880_020 Hb_009233_020 Hb_009233_020 Hb_003734_070--Hb_009233_020 Hb_009225_060 Hb_009225_060 Hb_003734_070--Hb_009225_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.50137 50.447 35.1489 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.105256 64.3228

CAGE analysis